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Journal of Clinical Microbiology, April 2003, p. 1785-1787, Vol. 41, No. 4
0095-1137/03/$08.00+0     DOI: 10.1128/JCM.41.4.1785-1787.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.

BIBI, a Bioinformatics Bacterial Identification Tool

G. Devulder,1* G. Perrière,2 F. Baty,1 and J. P. Flandrois1

UMR CNRS 5558, Laboratoire de Bactériologie, Faculté de Médecine Lyon-Sud, 69921 Oullins Cedex,1 UMR CNRS 5558, Université Claude Bernard-Lyon 1, 69622 Villeurbanne Cedex, France2

Received 23 September 2002/ Returned for modification 27 November 2002/ Accepted 20 January 2003

BIBI was designed to automate DNA sequence analysis for bacterial identification in the clinical field. BIBI relies on the use of BLAST and CLUSTAL W programs applied to different subsets of sequences extracted from GenBank. These sequences are filtered and stored in a new database, which is adapted to bacterial identification.

* Corresponding author. Mailing address: UMR CNRS 5558, Laboratoire de Bactériologie, Faculté de Médecine Lyon-Sud, BP 12, 69921 Oullins Cedex, France. Phone: 33-4-7886-3167. Fax: 33-4-7886-3149. E-mail: devulder{at}biomserv.univ-lyon1.fr.

Journal of Clinical Microbiology, April 2003, p. 1785-1787, Vol. 41, No. 4
0095-1137/03/$08.00+0     DOI: 10.1128/JCM.41.4.1785-1787.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.



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