JCM -- Table of Contents (December 1 2007, 45 [12])

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Contents: December 2007, Volume 45, Issue 12

       Bacteriology

       Virology

       Mycobacteriology and Aerobic Actinomycetes

       Clinical Veterinary Microbiology

       Mycology

       Chlamydiology and Rickettsiology

       Epidemiology

       Case Reports

       Letters To The Editor

       Errata

       Author's Correction

Other Issues

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Bacteriology:

Aggregatibacter actinomycetemcomitans and Its Relationship to Initiation of Localized Aggressive Periodontitis: Longitudinal Cohort Study of Initially Healthy Adolescents
Daniel H. Fine, Kenneth Markowitz, David Furgang, Karen Fairlie, Javier Ferrandiz, Cebile Nasri, Marie McKiernan, and John Gunsolley
J. Clin. Microbiol. December 2007 45: 3859-3869; published ahead of print October 17, 2007, doi:10.1128/JCM.00653-07
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Genetic Rearrangements of Tn1546-Like Elements in Vancomycin-Resistant Enterococcus faecium Isolates Collected from Hospitalized Patients over a Seven-Year Period
Il Joong Park, Wee Gyo Lee, Young Ae Lim, and Sung Ran Cho
J. Clin. Microbiol. December 2007 45: 3903-3908; published ahead of print September 26, 2007, doi:10.1128/JCM.01085-07
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Trends in Prescribing β-Lactam Antibiotics for Treatment of Community-Associated Methicillin-Resistant Staphylococcus aureus Infections
Kalpana Gupta, Ann MacIntyre, Gary Vanasse, and Louise-Marie Dembry
J. Clin. Microbiol. December 2007 45: 3930-3934; published ahead of print October 17, 2007, doi:10.1128/JCM.01510-07
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Detection of Inducible Clindamycin Resistance in Staphylococci by Broth Microdilution Using Erythromycin-Clindamycin Combination Wells
Jana M. Swenson, William B. Brasso, Mary Jane Ferraro, Dwight J. Hardy, Cynthia C. Knapp, Linda K. McDougal, L. Barth Reller, Helio S. Sader, Dee Shortridge, Robert Skov, Melvin P. Weinstein, Barbara L. Zimmer, and Jean B. Patel
J. Clin. Microbiol. December 2007 45: 3954-3957; published ahead of print October 17, 2007, doi:10.1128/JCM.01501-07
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Genotypic and Phenotypic Analysis of Enterobacter sakazakii Strains from an Outbreak Resulting in Fatalities in a Neonatal Intensive Care Unit in France
J. Caubilla-Barron, E. Hurrell, S. Townsend, P. Cheetham, C. Loc-Carrillo, O. Fayet, M.-F. Prère, and S. J. Forsythe
J. Clin. Microbiol. December 2007 45: 3979-3985; published ahead of print October 10, 2007, doi:10.1128/JCM.01075-07
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Prevalence of Chlamydia trachomatis Infection among Low- and High-Risk Filipino Women and Performance of Chlamydia Rapid Tests in Resource-Limited Settings
Francis Saison, Lourdes Mahilum-Tapay, Claude-Edouard E. Michel, Nigel D. Buttress, Elpidio Cesar B. Nadala, Jr., Jose Paolo V. Magbanua, Emma M. Harding-Esch, M. Odeta Villaruel, Lorna Canong, Rey L. Celis, and Helen H. Lee
J. Clin. Microbiol. December 2007 45: 4011-4017; published ahead of print October 17, 2007, doi:10.1128/JCM.01343-07
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Agar Dilution Method for Detection of Inducible Clindamycin Resistance in Staphylococcus spp.
Clarence J. Fernandes, Matthew V. N. O'Sullivan, Yongwei Cai, Fanrong Kong, Xianyu Zeng, Gwendolyn L. Gilbert, and George Kotsiou
J. Clin. Microbiol. December 2007 45: 4018-4020; published ahead of print October 17, 2007, doi:10.1128/JCM.01158-07
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Microevolution of Helicobacter pylori Type IV Secretion Systems in an Ulcer Disease Patient over a Ten-Year Period
Ayesha Alvi, S. Manjulata Devi, Irshad Ahmed, M. Abid Hussain, Mohammed Rizwan, Hérve Lamouliatte, Francis Mégraud, and Niyaz Ahmed
J. Clin. Microbiol. December 2007 45: 4039-4043; published ahead of print October 17, 2007, doi:10.1128/JCM.01631-07
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Comparison of Three Commercial Test Systems for Biotyping Haemophilus influenzae and Haemophilus parainfluenzae
Erik L. Munson and Gary V. Doern
J. Clin. Microbiol. December 2007 45: 4051-4053; published ahead of print October 17, 2007, doi:10.1128/JCM.01663-07
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Isolation and Characterization of a Novel Helicobacter Species, "Helicobacter macacae," from Rhesus Monkeys with and without Chronic Idiopathic Colitis
James G. Fox, Samuel R. Boutin, Laurence K. Handt, Nancy S. Taylor, Shilu Xu, Barry Rickman, Robert P. Marini, Floyd E. Dewhirst, Bruce J. Paster, Sherri Motzel, and Hilton J. Klein
J. Clin. Microbiol. December 2007 45: 4061-4063; published ahead of print October 10, 2007, doi:10.1128/JCM.01100-07
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Comparison of Multiple-Locus Variable-Number Tandem-Repeat Analysis with Other PCR-Based Methods for Typing Brucella suis Isolates
David García-Yoldi, Philippe Le Fleche, María J. De Miguel, Pilar M. Muñoz, José M. Blasco, Zeljko Cvetnic, Clara M. Marín, Gilles Vergnaud, and Ignacio López-Goñi
J. Clin. Microbiol. December 2007 45: 4070-4072; published ahead of print October 17, 2007, doi:10.1128/JCM.01096-07
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Virology:

Emergence of Usutu Virus in Hungary
Tamás Bakonyi, Károly Erdélyi, Krisztina Ursu, Emoke Ferenczi, Tibor Csörgo, Helga Lussy, Sonja Chvala, Christiane Bukovsky, Tanja Meister, Herbert Weissenböck, and Norbert Nowotny
J. Clin. Microbiol. December 2007 45: 3870-3874; published ahead of print October 3, 2007, doi:10.1128/JCM.01390-07
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Evaluation of a Multiplexed PCR Assay for Detection of Respiratory Viral Pathogens in a Public Health Laboratory Setting
David J. Marshall, Erik Reisdorf, Gerda Harms, Edward Beaty, Michael J. Moser, Wai-Ming Lee, James E. Gern, Frederick S. Nolte, Pete Shult, and James R. Prudent
J. Clin. Microbiol. December 2007 45: 3875-3882; published ahead of print October 10, 2007, doi:10.1128/JCM.00838-07
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Effect of Viral Load on the Outcome of Herpes Zoster
M. L. Quinlivan, K. Ayres, H. Ran, S. McElwaine, M. Leedham-Green, F. T. Scott, R. W. Johnson, and J. Breuer
J. Clin. Microbiol. December 2007 45: 3909-3914; published ahead of print September 12, 2007, doi:10.1128/JCM.00874-07
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Evolution of Primary and Compensatory Lamivudine Resistance Mutations in Chronic Hepatitis B Virus-Infected Patients during Long-Term Lamivudine Treatment, Assessed by a Line Probe Assay
Evelien Libbrecht, Joke Doutreloigne, Hilde Van De Velde, Man-Fung Yuen, Ching-Lung Lai, Fred Shapiro, and Erwin Sablon
J. Clin. Microbiol. December 2007 45: 3935-3941; published ahead of print October 3, 2007, doi:10.1128/JCM.00020-07
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Hepatitis B Virus Core-Related Antigens as Markers for Monitoring Chronic Hepatitis B Infection
Danny Ka-Ho Wong, Yasuhito Tanaka, Ching-Lung Lai, Masashi Mizokami, James Fung, and Man-Fung Yuen
J. Clin. Microbiol. December 2007 45: 3942-3947; published ahead of print October 17, 2007, doi:10.1128/JCM.00366-07
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Characterization of a New Sensitive PCR Assay for Quantification of Viral DNA Isolated from Patients with Hepatitis B Virus Infections
Vincent Thibault, Christian Pichoud, Carolyn Mullen, James Rhoads, Jane B. Smith, Alain Bitbol, Sven Thamm, and Fabien Zoulim
J. Clin. Microbiol. December 2007 45: 3948-3953; published ahead of print October 17, 2007, doi:10.1128/JCM.01180-07
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Detection and Typing of Human Herpesvirus 6 by Molecular Methods in Specimens from Patients Diagnosed with Encephalitis or Meningitis
Norma P. Tavakoli, Seela Nattanmai, Rene Hull, Heather Fusco, Lela Dzigua, Heng Wang, and Michelle Dupuis
J. Clin. Microbiol. December 2007 45: 3972-3978; published ahead of print October 17, 2007, doi:10.1128/JCM.01692-07
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Norovirus Infections in Symptomatic and Asymptomatic Food Handlers in Japan
Kazuhiro Ozawa, Tomoichiro Oka, Naokazu Takeda, and Grant S. Hansman
J. Clin. Microbiol. December 2007 45: 3996-4005; published ahead of print October 10, 2007, doi:10.1128/JCM.01516-07
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Emergence of a New Norovirus Variant in Scotland in 2006
W. E. Adamson, R. N. Gunson, A. Maclean, and W. F. Carman
J. Clin. Microbiol. December 2007 45: 4058-4060; published ahead of print October 17, 2007, doi:10.1128/JCM.01853-07
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Detection of High-Risk Papillomavirus DNA with Commercial Invader-Technology-Based Analyte-Specific Reagents following Automated Extraction of DNA from Cervical Brushings in ThinPrep Media
Ted E. Schutzbank, Charlene Jarvis, Nicole Kahmann, Katherine Lopez, Marlea Weimer, and Aleta Yount
J. Clin. Microbiol. December 2007 45: 4067-4069; published ahead of print October 24, 2007, doi:10.1128/JCM.01833-07
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Mycobacteriology and Aerobic Actinomycetes:

Mycobacterium avium Subspecies paratuberculosis Infection in Cases of Irritable Bowel Syndrome and Comparison with Crohn's Disease and Johne's Disease: Common Neural and Immune Pathogenicities
Antonio M. Scanu, Tim J. Bull, Sara Cannas, Jeremy D. Sanderson, Leonardo A. Sechi, Giuseppe Dettori, Stefania Zanetti, and John Hermon-Taylor
J. Clin. Microbiol. December 2007 45: 3883-3890; published ahead of print October 3, 2007, doi:10.1128/JCM.01371-07
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Discovery of a Novel Mycobacterium tuberculosis Lineage That Is a Major Cause of Tuberculosis in Rio de Janeiro, Brazil
Luiz Claudio Oliveira Lazzarini, Richard C. Huard, Neio L. Boechat, Harrison M. Gomes, Maranibia C. Oelemann, Natalia Kurepina, Elena Shashkina, Fernanda C. Q. Mello, Andrea L. Gibson, Milena J. Virginio, Ana Grazia Marsico, W. Ray Butler, Barry N. Kreiswirth, Philip N. Suffys, Jose Roberto Lapa e Silva, and John L. Ho
J. Clin. Microbiol. December 2007 45: 3891-3902; published ahead of print September 26, 2007, doi:10.1128/JCM.01394-07
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Rapid, Standardized Method for Determination of Mycobacterium tuberculosis Drug Susceptibility by Use of Mycolic Acid Analysis
Nicole Parrish, Gerard Osterhout, Kim Dionne, Amy Sweeney, Nicole Kwiatkowski, Karen Carroll, Kenneth C. Jost, Jr., and James Dick
J. Clin. Microbiol. December 2007 45: 3915-3920; published ahead of print October 3, 2007, doi:10.1128/JCM.02528-06
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Molecular Characteristics of the Mycobacterium tuberculosis LAM-RUS Family Prevalent in Central Russia
Svetlana Dubiley, Eugene Kirillov, Anna Ignatova, Valentina Stepanshina, and Igor Shemyakin
J. Clin. Microbiol. December 2007 45: 4036-4038; published ahead of print October 17, 2007, doi:10.1128/JCM.01217-07
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Cavitary Disease and Quantitative Sputum Bacillary Load in Cases of Pulmonary Tuberculosis
Moises Palaci, Reynaldo Dietze, David Jamil Hadad, Fabiola Karla Corrêa Ribeiro, Renata Lyrio Peres, Solange Alves Vinhas, Ethel Leonor Noia Maciel, Valdério do Valle Dettoni, Libby Horter, W. Henry Boom, John L. Johnson, and Kathleen D. Eisenach
J. Clin. Microbiol. December 2007 45: 4064-4066; published ahead of print October 10, 2007, doi:10.1128/JCM.01780-07
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Clinical Veterinary Microbiology:

Genetic Diversity of Actinobacillus pleuropneumoniae Assessed by Amplified Fragment Length Polymorphism Analysis
Branko Kokotovic and Øystein Angen
J. Clin. Microbiol. December 2007 45: 3921-3929; published ahead of print October 24, 2007, doi:10.1128/JCM.00906-07
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Molecular Epidemiology of Two Klebsiella pneumoniae Mastitis Outbreaks on a Dairy Farm in New York State
Marcos A. Munoz, Francis L. Welcome, Ynte H. Schukken, and Ruth N. Zadoks
J. Clin. Microbiol. December 2007 45: 3964-3971; published ahead of print October 10, 2007, doi:10.1128/JCM.00795-07
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Canine Parvovirus Types 2c and 2b Circulating in North American Dogs in 2006 and 2007
Sanjay Kapil, Emily Cooper, Cathy Lamm, Brandy Murray, Grant Rezabek, Larry Johnston, III, Gregory Campbell, and Bill Johnson
J. Clin. Microbiol. December 2007 45: 4044-4047; published ahead of print October 10, 2007, doi:10.1128/JCM.01300-07
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Mycology:

Comparison of Microsatellite Length Polymorphism and Multilocus Sequence Typing for DNA-Based Typing of Candida albicans
Dea Garcia-Hermoso, Odile Cabaret, Gael Lecellier, Marie Desnos-Ollivier, Damien Hoinard, Dorothée Raoux, Jean-Marc Costa, Françoise Dromer, and Stéphane Bretagne
J. Clin. Microbiol. December 2007 45: 3958-3963; published ahead of print October 10, 2007, doi:10.1128/JCM.01261-07
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Chlamydiology and Rickettsiology:

Evaluation of a Novel PCR-Based Assay for Detection and Identification of Chlamydia trachomatis Serovars in Cervical Specimens
Koen Quint, Carolina Porras, Mahboobeh Safaeian, Paula González, Allan Hildesheim, Wim Quint, Leen-Jan van Doorn, Sandra Silva, Willem Melchers, Mark Schiffman, Ana Cecilia Rodríguez, Sholom Wacholder, Enrique Freer, Bernal Cortes, Rolando Herrero for the Costa Rican Vaccine Trial Group
J. Clin. Microbiol. December 2007 45: 3986-3991; published ahead of print October 24, 2007, doi:10.1128/JCM.01155-07
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Epidemiology:

Prevalence of Methicillin-Resistant Staphylococcus aureus Nasal Colonization among Taiwanese Children in 2005 and 2006
Yhu-Chering Huang, Kao-Pin Hwang, Po-Yen Chen, Chih-Jung Chen, and Tzou-Yien Lin
J. Clin. Microbiol. December 2007 45: 3992-3995; published ahead of print October 17, 2007, doi:10.1128/JCM.01202-07
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Changing Antimicrobial Susceptibility Epidemiology of Helicobacter pylori Strains in Japan between 2002 and 2005
Intetsu Kobayashi, Kazunari Murakami, Mototsugu Kato, Seiichi Kato, Takeshi Azuma, Shin'ichi Takahashi, Naomi Uemura, Tsutomu Katsuyama, Yoshihiro Fukuda, Ken Haruma, Masaru Nasu, and Toshio Fujioka
J. Clin. Microbiol. December 2007 45: 4006-4010; published ahead of print October 17, 2007, doi:10.1128/JCM.00740-07
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Predominance of Community-Associated Methicillin-Resistant Staphylococcus aureus Strains Carrying Staphylococcal Chromosome Cassette mec Type IVA in South Korea
Chulmin Park, Dong-Gun Lee, Sun Woo Kim, Su-Mi Choi, Sun Hee Park, Hye-Sun Chun, Jung-Hyun Choi, Jin-Hong Yoo, Wan Shik Shin, Jin Han Kang, Jong Hyun Kim, Soo Young Lee, Sun Mi Kim, and Bok Yang Pyun
J. Clin. Microbiol. December 2007 45: 4021-4026; published ahead of print October 17, 2007, doi:10.1128/JCM.01147-07
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Population-Based Molecular Epidemiological Study of Tuberculosis in Malatya, Turkey
Riza Durmaz, Thierry Zozio, Selami Gunal, Caroline Allix, Maryse Fauville-Dufaux, and Nalin Rastogi
J. Clin. Microbiol. December 2007 45: 4027-4035; published ahead of print October 10, 2007, doi:10.1128/JCM.01308-07
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Molecular Typing of a Suspected Cluster of Nocardia farcinica Infections by Use of Randomly Amplified Polymorphic DNA, Pulsed-Field Gel Electrophoresis, and Amplified Fragment Length Polymorphism Analyses
J. S. Kalpoe, K. E. Templeton, A. M. Horrevorts, H. P. Endtz, E. J. Kuijper, A. T. Bernards, and C. H. W. Klaassen
J. Clin. Microbiol. December 2007 45: 4048-4050; published ahead of print October 3, 2007, doi:10.1128/JCM.00932-07
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Clonal Spread of Imipenem-Resistant Acinetobacter baumannii among Different Cities of China
Hua Zhou, Qing Yang, Yun-Song Yu, Ze-Qing Wei, and Lan-Juan Li
J. Clin. Microbiol. December 2007 45: 4054-4057; published ahead of print October 17, 2007, doi:10.1128/JCM.00343-07
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Case Reports:

Burkholderia pseudomallei Endophthalmitis
Kuan-Jen Chen, Ming-Hui Sun, Chiun-Ho Hou, Chi-Chin Sun, and Tun-Lu Chen
J. Clin. Microbiol. December 2007 45: 4073-4074; published ahead of print October 3, 2007, doi:10.1128/JCM.01467-07
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Clinical Mycobacterium conspicuum Isolation from Two Immunocompetent Patients in The Netherlands
J. van Ingen, M. J. Boeree, F. S. Stals, C. C. M. Pitz, J. J. C. M. Rooijmans-Rietjens, A. G. M. van der Zanden, P. N. R. Dekhuijzen, and D. van Soolingen
J. Clin. Microbiol. December 2007 45: 4075-4076; published ahead of print October 17, 2007, doi:10.1128/JCM.00867-07
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Cystic Fibrosis Patient with Burkholderia pseudomallei Infection Acquired in Brazil
Afonso Luís Barth, Fernando Antonio de Abreu e Silva, Anneliese Hoffmann, Maria Izolete Vieira, Alexandre Prehn Zavascki, Alex Guerra Ferreira, Luiz Gonzaga da Cunha, Jr., Rodolpho Mattos Albano, and Elizabeth de Andrade Marques
J. Clin. Microbiol. December 2007 45: 4077-4080; published ahead of print October 17, 2007, doi:10.1128/JCM.01386-07
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Bivalvular Bartonella henselae Prosthetic Valve Endocarditis
Holenarasipur R. Vikram, A. Kirstin Bacani, Patrick A. DeValeria, Scott A. Cunningham, and Franklin R. Cockerill, III
J. Clin. Microbiol. December 2007 45: 4081-4084; published ahead of print October 17, 2007, doi:10.1128/JCM.01095-07
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Mycobacterium bovis BCG Vertebral Osteomyelitis after Intravesical BCG Therapy, Diagnosed by PCR-Based Genomic Deletion Analysis
Takuya Nikaido, Kei Ishibashi, Koji Otani, Shoji Yabuki, Shinichi Konno, Shuichi Mori, Kazutaka Ohashi, Takashi Ishida, Michiko Nakano, Osamu Yamaguchi, Tatsuo Suzutani, and Shinichi Kikuchi
J. Clin. Microbiol. December 2007 45: 4085-4087; published ahead of print October 24, 2007, doi:10.1128/JCM.01714-07
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Letters To The Editor:

Evaluation of the Inoculation Procedure Using a 0.25 McFarland Standard for the BD Phoenix Automated Microbiology System
J.-L. Donay, P. Fernandes, P. H. Lagrange, and J.-L. Herrmann
J. Clin. Microbiol. December 2007 45: 4088-4089; published ahead of print October 3, 2007, doi:10.1128/JCM.01847-07
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In Vivo Emergence of High-Level Macrolide Resistance in Streptococcus pneumoniae following a Single Dose of Azithromycin
H. C. Smith-Vaughan, R. L. Marsh, P. S. Morris, and A. J. Leach
J. Clin. Microbiol. December 2007 45: 4090-4091; published ahead of print October 17, 2007, doi:10.1128/JCM.01213-07
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Designation of Major Mycobacterial Interspersed Repetitive-Unit Types within Mycobacterium tuberculosis Beijing Genotype, an Important Point
Igor Mokrousov, Olga Narvskaya, M. Hanekom, G. D. van der Spuy, N. C. Gey van Pittius, C. R. E. McEvoy, S. L. Ndabambi, T. C. Victor, E. G. Hoal, P. D. van Helden, and R. M. Warren
J. Clin. Microbiol. December 2007 45: 4092-4093;
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New Vitek 2 Colorimetric GN Card for Identification of Gram-Negative Nonfermentative Bacilli
David H. Pincus, R. Zbinden, A. Zbinden, P. P. Bosshard, and E. C. Böttger
J. Clin. Microbiol. December 2007 45: 4094-4095;
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Errata:

Impact of Hepatitis C Virus (HCV) Genotypes on Quantification of HCV RNA in Serum by COBAS AmpliPrep/COBAS TaqMan HCV Test, Abbott HCV RealTime Assay, and VERSANT HCV RNA Assay
Edouard Tuaillon, Anne-Marie Mondain, Laure Ottomani, Laurent Roudière, Pascal Perney, Marie-Christine Picot, Fabienne Séguret, François Blanc, Dominique Larrey, Philippe Van de Perre, and Jacques Ducos
J. Clin. Microbiol. December 2007 45: 4096
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Potential of a Simplified p24 Assay for Early Diagnosis of Infant Human Immunodeficiency Virus Type 1 Infection in Haiti
Erik George, Carole Anne Beauharnais, Emilio Brignoli, Francine Noel, Gyrlande Bois, Patricia De Matteis Rouzier, Martine Altenor, Daniel Lauture, Marlène Hosty, Sapna Mehta, Peter F. Wright, and Jean W. Pape
J. Clin. Microbiol. December 2007 45: 4097
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Author's Correction:

Report of the First Human Case of Caulobacter sp. Infection
Ulrik S. Justesen, Hanne M. Holt, Helle C. Thiesson, Jens Blom, Xiaohui C. Nielsen, Rimtas Dargis, Michael Kemp, and Jens J. Christensen
J. Clin. Microbiol. December 2007 45: 4098
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.