JCM -- Table of Contents (July 1 2007, 45 [7])

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Contents: July 2007, Volume 45, Issue 7

       Virology

       Parasitology

       Mycobacteriology and Aerobic Actinomycetes

       Bacteriology

       Mycology

       Epidemiology

       Case Reports

       Letters To The Editor

       Errata

       Retraction

Other Issues

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Table of Contents

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Virology:

Simultaneous Detection and High-Throughput Identification of a Panel of RNA Viruses Causing Respiratory Tract Infections
Haijing Li, Melinda A. McCormac, R. Wray Estes, Susan E. Sefers, Ryan K. Dare, James D. Chappell, Dean D. Erdman, Peter F. Wright, and Yi-Wei Tang
J. Clin. Microbiol. July 2007 45: 2105-2109; published ahead of print May 16, 2007, doi:10.1128/JCM.00210-07
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Real-Time PCR for Diagnosis of Human Bocavirus Infections and Phylogenetic Analysis
Florian Neske, Kerstin Blessing, Franz Tollmann, Jörg Schubert, Axel Rethwilm, Hans Wolfgang Kreth, and Benedikt Weissbrich
J. Clin. Microbiol. July 2007 45: 2116-2122; published ahead of print May 2, 2007, doi:10.1128/JCM.00027-07
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Comparison of Results of Detection of Rhinovirus by PCR and Viral Culture in Human Nasal Wash Specimens from Subjects with and without Clinical Symptoms of Respiratory Illness
Peter F. Wright, Anne M. Deatly, Ruth A. Karron, Robert B. Belshe, Jian R. Shi, William C. Gruber, Yuwei Zhu, and Valerie B. Randolph
J. Clin. Microbiol. July 2007 45: 2126-2129; published ahead of print May 2, 2007, doi:10.1128/JCM.02553-06
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Comparison of the Digene Hybrid Capture 2 Assay and Roche AMPLICOR and LINEAR ARRAY Human Papillomavirus (HPV) Tests in Detecting High-Risk HPV Genotypes in Specimens from Women with Previous Abnormal Pap Smear Results
Matthew P. Stevens, Suzanne M. Garland, Elice Rudland, Jeffrey Tan, Michael A. Quinn, and Sepehr N. Tabrizi
J. Clin. Microbiol. July 2007 45: 2130-2137; published ahead of print May 9, 2007, doi:10.1128/JCM.02438-06
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Discovery of a Novel Human Picornavirus in a Stool Sample from a Pediatric Patient Presenting with Fever of Unknown Origin
Morris S. Jones, Vladimir V. Lukashov, Robert D. Ganac, and David P. Schnurr
J. Clin. Microbiol. July 2007 45: 2144-2150; published ahead of print April 25, 2007, doi:10.1128/JCM.00174-07
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Comparison of Various Blood Compartments and Reporting Units for the Detection and Quantification of Epstein-Barr Virus in Peripheral Blood
H. Hakim, C. Gibson, J. Pan, K. Srivastava, Z. Gu, M. J. Bankowski, and R. T. Hayden
J. Clin. Microbiol. July 2007 45: 2151-2155; published ahead of print May 9, 2007, doi:10.1128/JCM.02308-06
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The Herpes Simplex Virus Type 1 BgK_L Variant, Unlike the BgO_L Variant, Shows a Higher Association with Orolabial Infection than with Infections at Other Sites, Supporting the Variant-Dispersion-Replacement Hypothesis
Shigeru Ozawa, Hiroyuki Eda, Yasuyuki Ishii, Fumihiko Ban, Toshiyuki Funabashi, Seiichiro Hata, Kozaburo Hayashi, Hiroki Iga, Takao Ikushima, Hiroaki Ishiko, Tomoo Itagaki, Rinji Kawana, Shunsaku Kobayashi, Takeo Ogino, Tsuyoshi Sekizawa, Yoshikazu Shimomura, Hiroshi Shiota, Ryoichi Mori, Takashi Nakakita, Yoshio Numazaki, Yoshikatsu Ozaki, Shigeru Yamamoto, Kamesaburo Yoshino, and Kazuo Yanagi
J. Clin. Microbiol. July 2007 45: 2183-2190; published ahead of print May 2, 2007, doi:10.1128/JCM.02472-06
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Molecular Epidemiology of Rotavirus in Central and Southeastern Europe
Olga Tcheremenskaia, Gianluca Marucci, Simona De Petris, Franco Maria Ruggeri, Darja Dovecar, Suncanica Ljubin Sternak, Irena Matyasova, Majlinda Kota Dhimolea, Zornitsa Mladenova, Lucia Fiore and the Rotavirus Study Group
J. Clin. Microbiol. July 2007 45: 2197-2204; published ahead of print May 16, 2007, doi:10.1128/JCM.00484-07
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Atypical Norovirus Epidemic in Hong Kong during Summer of 2006 Caused by a New Genogroup II/4 Variant
Eric C. M. Ho, Peter K. C. Cheng, Angela W. L. Lau, Ann H. Wong, and Wilina W. L. Lim
J. Clin. Microbiol. July 2007 45: 2205-2211; published ahead of print May 2, 2007, doi:10.1128/JCM.02489-06
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Increased Detection of Respiratory Syncytial Virus, Influenza Viruses, Parainfluenza Viruses, and Adenoviruses with Real-Time PCR in Samples from Patients with Respiratory Symptoms
Alma C. van de Pol, Anton M. van Loon, Tom F. W. Wolfs, Nicolaas J. G. Jansen, Monique Nijhuis, Els Klein Breteler, Rob Schuurman, and John W. A. Rossen
J. Clin. Microbiol. July 2007 45: 2260-2262; published ahead of print May 16, 2007, doi:10.1128/JCM.00848-07
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Ultrasensitive p24 Antigen Assay for Diagnosis of Perinatal Human Immunodeficiency Virus Type 1 Infection
Susan A. Fiscus, Jeffrey Wiener, Elaine J. Abrams, Marc Bulterys, Ada Cachafeiro, and Richard A. Respess
J. Clin. Microbiol. July 2007 45: 2274-2277; published ahead of print May 2, 2007, doi:10.1128/JCM.00813-07
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Erythrocyte Binding Preference of Avian Influenza H5N1 Viruses
Suda Louisirirotchanakul, Hatairat Lerdsamran, Witthawat Wiriyarat, Kantima Sangsiriwut, Kridsda Chaichoune, Phisanu Pooruk, Taweesak Songserm, Rungrueng Kitphati, Pathom Sawanpanyalert, Chulaluk Komoltri, Prasert Auewarakul, and Pilaipan Puthavathana
J. Clin. Microbiol. July 2007 45: 2284-2286; published ahead of print May 23, 2007, doi:10.1128/JCM.00921-07
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Isolation and Molecular Characterization of Aichi Viruses from Fecal Specimens Collected in Japan, Bangladesh, Thailand, and Vietnam
Ngan Thi Kim Pham, Pattara Khamrin, Tuan Anh Nguyen, Dey Shuvra Kanti, Tung Gia Phan, Shoko Okitsu, and Hiroshi Ushijima
J. Clin. Microbiol. July 2007 45: 2287-2288; published ahead of print May 23, 2007, doi:10.1128/JCM.00525-07
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Performance of the HerpeSelect (Focus) and Kalon Enzyme-Linked Immunosorbent Assays for Detection of Antibodies against Herpes Simplex Virus Type 2 by Use of Monoclonal Antibody-Blocking Enzyme Immunoassay and Clinicovirological Reference Standards in Brazil
Maria Claudia Nascimento, Suzete Ferreira, Ester Sabino, Ingrid Hamilton, John Parry, Claudio S. Pannuti, and Philippe Mayaud
J. Clin. Microbiol. July 2007 45: 2309-2311; published ahead of print May 16, 2007, doi:10.1128/JCM.00144-07
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Parasitology:

Detection and Identification of Leishmania Species from Clinical Specimens by Using a Real-Time PCR Assay and Sequencing of the Cytochrome b Gene
Françoise Foulet, Françoise Botterel, Pierre Buffet, Gloria Morizot, Danièle Rivollet, Michèle Deniau, Francine Pratlong, Jean-Marc Costa, and Stéphane Bretagne
J. Clin. Microbiol. July 2007 45: 2110-2115; published ahead of print May 2, 2007, doi:10.1128/JCM.02555-06
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Isolation and Propagation of the Ap-Variant 1 Strain of Anaplasma phagocytophilum in a Tick Cell Line
Robert F. Massung, Michael L. Levin, Ulrike G. Munderloh, David J. Silverman, Meghan J. Lynch, Jariyanart K. Gaywee, and Timothy J. Kurtti
J. Clin. Microbiol. July 2007 45: 2138-2143; published ahead of print May 2, 2007, doi:10.1128/JCM.00478-07
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Mycobacteriology and Aerobic Actinomycetes:

Evaluation of Direct Detection of Mycobacterium tuberculosis Rifampin Resistance by a Nitrate Reductase Assay Applied to Sputum Samples in Cotonou, Benin
Dissou Affolabi, Mathieu Odoun, Anandi Martin, Juan Carlos Palomino, Séverin Anagonou, and Françoise Portaels
J. Clin. Microbiol. July 2007 45: 2123-2125; published ahead of print May 2, 2007, doi:10.1128/JCM.00691-07
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Organisms Designated as Nocardia asteroides Drug Pattern Type VI Are Members of the Species Nocardia cyriacigeorgica
Patricia S. Conville and Frank G. Witebsky
J. Clin. Microbiol. July 2007 45: 2257-2259; published ahead of print May 2, 2007, doi:10.1128/JCM.00133-07
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Bacteriology:

Rapid Identification of Staphylococci Isolated in Clinical Microbiology Laboratories by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Etienne Carbonnelle, Jean-Luc Beretti, Stéphanie Cottyn, Gilles Quesne, Patrick Berche, Xavier Nassif, and Agnès Ferroni
J. Clin. Microbiol. July 2007 45: 2156-2161; published ahead of print May 16, 2007, doi:10.1128/JCM.02405-06
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Discrepancy in Antimicrobial Susceptibility Test Results Obtained for Oral Streptococci with the Etest and Agar Dilution
Eiman M. Mokaddas, Nathaneal O. Salako, Leeba Philip, and Vincent O. Rotimi
J. Clin. Microbiol. July 2007 45: 2162-2165; published ahead of print May 2, 2007, doi:10.1128/JCM.00063-07
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Enterohepatic Helicobacter Species Are Prevalent in Mice from Commercial and Academic Institutions in Asia, Europe, and North America
Nancy S. Taylor, Shilu Xu, Prashant Nambiar, Floyd E. Dewhirst, and James G. Fox
J. Clin. Microbiol. July 2007 45: 2166-2172; published ahead of print May 16, 2007, doi:10.1128/JCM.00137-07
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Comparative In Vitro Antimicrobial Activity of Tigecycline, a New Glycylcycline Compound, in Freshly Prepared Medium and Quality Control
Steven D. Brown and Maria M. Traczewski
J. Clin. Microbiol. July 2007 45: 2173-2179; published ahead of print May 9, 2007, doi:10.1128/JCM.02351-06
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Clinical Validation of the Molecular BD GeneOhm StaphSR Assay for Direct Detection of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus in Positive Blood Cultures
Paul D. Stamper, Mian Cai, Tracy Howard, Sharon Speser, and Karen C. Carroll
J. Clin. Microbiol. July 2007 45: 2191-2196; published ahead of print May 23, 2007, doi:10.1128/JCM.00552-07
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Limited Applicability of Direct Fluorescent-Antibody Testing for Bordetella sp. and Legionella sp. Specimens for the Clinical Microbiology Laboratory
Rosemary C. She, Erick Billetdeaux, Amit R. Phansalkar, and Cathy A. Petti
J. Clin. Microbiol. July 2007 45: 2212-2214; published ahead of print May 23, 2007, doi:10.1128/JCM.00548-07
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Multiple-Locus Variable-Number Tandem-Repeat Assay Analysis of Methicillin-Resistant Staphylococcus aureus Strains
Fred C. Tenover, Rebekah R. Vaughn, Linda K. McDougal, Gregory E. Fosheim, and John E. McGowan, Jr.
J. Clin. Microbiol. July 2007 45: 2215-2219; published ahead of print May 9, 2007, doi:10.1128/JCM.02451-06
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Systems Approach to Improving Antimicrobial Susceptibility Testing in Clinical Laboratories in the United States
Jon M. Counts, J. Rex Astles, Fred C. Tenover, and Janet Hindler
J. Clin. Microbiol. July 2007 45: 2230-2234; published ahead of print May 23, 2007, doi:10.1128/JCM.00184-07
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emm Types, Virulence Factors, and Antibiotic Resistance of Invasive Streptococcus pyogenes Isolates from Italy: What Has Changed in 11 Years?
Roberta Creti, Monica Imperi, Lucilla Baldassarri, Marco Pataracchia, Simona Recchia, Giovanna Alfarone, and Graziella Orefici
J. Clin. Microbiol. July 2007 45: 2249-2256; published ahead of print May 9, 2007, doi:10.1128/JCM.00513-07
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Rapid Identification of Staphylococcus aureus in Blood Cultures by Use of the Direct Tube Coagulase Test
Qinfang Qian, Karen Eichelberger, and James E. Kirby
J. Clin. Microbiol. July 2007 45: 2267-2269; published ahead of print May 23, 2007, doi:10.1128/JCM.00369-07
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Evaluation of the Colorimetric VITEK 2 Card for Identification of Gram-Negative Nonfermentative Rods: Comparison to 16S rRNA Gene Sequencing
A. Zbinden, E. C. Böttger, P. P. Bosshard, and R. Zbinden
J. Clin. Microbiol. July 2007 45: 2270-2273; published ahead of print May 16, 2007, doi:10.1128/JCM.02604-06
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Comparison of Two Versions of the IDI-MRSA Assay Using Charcoal Swabs for Prospective Nasal and Nonnasal Surveillance Samples
Sean X. Zhang, Steven J. Drews, Joanne Tomassi, and Kevin C. Katz
J. Clin. Microbiol. July 2007 45: 2278-2280; published ahead of print May 23, 2007, doi:10.1128/JCM.00469-07
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Use of CultureSwab Plus Swabs with Amies Gel Agar for Testing of Naris Specimens with the GeneOhm MRSA Assay
P. P. Bourbeau, J. A. Riley, B. C. Shoemaker, and K. S. Jones
J. Clin. Microbiol. July 2007 45: 2281-2283; published ahead of print May 9, 2007, doi:10.1128/JCM.01600-06
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RTX Toxin Actin Cross-Linking Activity in Clinical and Environmental Isolates of Vibrio cholerae
Christina L. Cordero, Shanmuga Sozhamannan, and Karla J. Fullner Satchell
J. Clin. Microbiol. July 2007 45: 2289-2292; published ahead of print May 23, 2007, doi:10.1128/JCM.00349-07
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Insertion Sequence 1515 in the ply Gene of a Type 1 Clinical Isolate of Streptococcus pneumoniae Abolishes Pneumolysin Expression
Fabien Garnier, Rajendra Prasad Janapatla, Emmanuelle Charpentier, Geoffrey Masson, Carole Grélaud, Jean François Stach, François Denis, and Marie-Cécile Ploy
J. Clin. Microbiol. July 2007 45: 2296-2297; published ahead of print May 9, 2007, doi:10.1128/JCM.02168-06
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Real-Time PCR for Determining Capsular Serotypes of Haemophilus influenzae
Younes Maaroufi, Jean-Marc De Bruyne, Corine Heymans, and Françoise Crokaert
J. Clin. Microbiol. July 2007 45: 2305-2308; published ahead of print May 16, 2007, doi:10.1128/JCM.00102-07
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Contribution of Polymorphisms in ankA, gltA, and groESL in Defining Genetic Variants of Anaplasma phagocytophilum
Sanjay K. Shukla, Vijay Aswani, Patrick J. Stockwell, and Kurt D. Reed
J. Clin. Microbiol. July 2007 45: 2312-2315; published ahead of print May 16, 2007, doi:10.1128/JCM.00704-07
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PCR-Restriction Fragment Length Polymorphism Analysis of Campylobacter jejuni Genes Involved in Lipooligosaccharide Biosynthesis Identifies Putative Molecular Markers for Guillain-Barré Syndrome
Peggy C. R. Godschalk, Alex van Belkum, Nicole van den Braak, Diana van Netten, C. Wim Ang, Bart C. Jacobs, Michel Gilbert, and Hubert P. Endtz
J. Clin. Microbiol. July 2007 45: 2316-2320; published ahead of print May 16, 2007, doi:10.1128/JCM.00203-07
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Mycology:

Quality Control and Reference Guidelines for CLSI Broth Microdilution Method (M38-A Document) for Susceptibility Testing of Anidulafungin against Molds
A. Espinel-Ingroff, A. Fothergill, M. Ghannoum, E. Manavathu, L. Ostrosky-Zeichner, M. A. Pfaller, M. G. Rinaldi, W. Schell, and T. J. Walsh
J. Clin. Microbiol. July 2007 45: 2180-2182; published ahead of print May 2, 2007, doi:10.1128/JCM.00399-07
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Identification of Medically Important Candida and Non-Candida Yeast Species by an Oligonucleotide Array
Shiang Ning Leaw, Hsien Chang Chang, Richard Barton, Jean-Philippe Bouchara, and Tsung Chain Chang
J. Clin. Microbiol. July 2007 45: 2220-2229; published ahead of print May 16, 2007, doi:10.1128/JCM.00543-07
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Phylogenetic Diversity and Microsphere Array-Based Genotyping of Human Pathogenic Fusaria, Including Isolates from the Multistate Contact Lens-Associated U.S. Keratitis Outbreaks of 2005 and 2006
Kerry O'Donnell, Brice A. J. Sarver, Mary Brandt, Douglas C. Chang, Judith Noble-Wang, Benjamin J. Park, Deanna A. Sutton, Lynette Benjamin, Mark Lindsley, Arvind Padhye, David M. Geiser, and Todd J. Ward
J. Clin. Microbiol. July 2007 45: 2235-2248; published ahead of print May 16, 2007, doi:10.1128/JCM.00533-07
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Epidemiology:

Evidence that the Spread of Mycobacterium tuberculosis Strains with the Beijing Genotype Is Human Population Dependent
M. Hanekom, G. D. van der Spuy, N. C. Gey van Pittius, C. R. E. McEvoy, S. L. Ndabambi, T. C. Victor, E. G. Hoal, P. D. van Helden, and R. M. Warren
J. Clin. Microbiol. July 2007 45: 2263-2266; published ahead of print May 2, 2007, doi:10.1128/JCM.02354-06
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Phenotypic Prediction Rule for Community-Associated Methicillin-Resistant Staphylococcus aureus
Kyle Popovich, Bala Hota, Thomas Rice, Alla Aroutcheva, and Robert A. Weinstein
J. Clin. Microbiol. July 2007 45: 2293-2295; published ahead of print May 9, 2007, doi:10.1128/JCM.00044-07
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Molecular Characterization of Methicillin-Resistant Staphylococcus aureus Isolates Collected in Asunción, Paraguay
Lys Mayor, Juana Ortellado, Carmen Menacho, Graciela Lird, Christine Courtier, Christine Gardon, Hélène Meugnier, Michèle Bes, François Vandenesch, and Jerome Etienne
J. Clin. Microbiol. July 2007 45: 2298-2300; published ahead of print May 23, 2007, doi:10.1128/JCM.00040-07
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Long Persistence of Methicillin-Susceptible Strains of Staphylococcus aureus Causing Sepsis in a Neonatal Intensive Care Unit
Carmen Gomez-Gonzalez, Concepción Alba, Joaquín R. Otero, Francisca Sanz, and Fernando Chaves
J. Clin. Microbiol. July 2007 45: 2301-2304; published ahead of print May 23, 2007, doi:10.1128/JCM.00019-07
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Case Reports:

Legionella jordanis Lower Respiratory Tract Infection: Case Report and Review
Donald C. Vinh, Richard Garceau, Gabriela Martinez, Debbie Wiebe, Tamara Burdz, Aleisha Reimer, and Kathryn Bernard
J. Clin. Microbiol. July 2007 45: 2321-2323; published ahead of print May 9, 2007, doi:10.1128/JCM.00314-07
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Fatal Bioprosthetic Aortic Valve Endocarditis Due to Cardiobacterium valvarum
Walter Geißdörfer, René Tandler, Christian Schlundt, Michael Weyand, Werner G. Daniel, and Christoph Schoerner
J. Clin. Microbiol. July 2007 45: 2324-2326; published ahead of print May 2, 2007, doi:10.1128/JCM.00400-07
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The Other Group G Streptococcus: Increased Detection of Streptococcus canis Ulcer Infections in Dog Owners
Maggie M. Lam, Jill E. Clarridge, III, E. J. Young, and Sally Mizuki
J. Clin. Microbiol. July 2007 45: 2327-2329; published ahead of print May 2, 2007, doi:10.1128/JCM.01765-06
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Rare Case of Nocardia asteroides Pericarditis in a Human Immunodeficiency Virus-Infected Patient
Sadao Jinno, Tanawat Jirakulaporn, Matthew J. Bankowski, Wesley Kim, and Russell Wong
J. Clin. Microbiol. July 2007 45: 2330-2333; published ahead of print May 16, 2007, doi:10.1128/JCM.00149-07
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Fatal Relapse of a Purulent Pleurisy Caused by Campylobacter fetus subsp. fetus
Jean-Winoc Decousser, Valérie Prouzet-Mauléon, Christine Bartizel, Thomas Gin, Jean-Pierre Colin, Nicolas Fadel, C. Holler, J. Pollet, and Francis Megraud
J. Clin. Microbiol. July 2007 45: 2334-2336; published ahead of print May 16, 2007, doi:10.1128/JCM.02562-06
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Meningitis Due to Gemella haemolysans in a Pediatric Case
Murat Anil, Nisel Ozkalay, Mehmet Helvaci, Neval Agus, Ozlem Guler, Aysu Dikerler, and Berat Kanar
J. Clin. Microbiol. July 2007 45: 2337-2339; published ahead of print May 16, 2007, doi:10.1128/JCM.00208-07
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Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-Virus Microarray
Charles Y. Chiu, Ash A. Alizadeh, Silvi Rouskin, Jason D. Merker, Elaine Yeh, Shigeo Yagi, David Schnurr, Bruce K. Patterson, Don Ganem, and Joseph L. DeRisi
J. Clin. Microbiol. July 2007 45: 2340-2343; published ahead of print May 9, 2007, doi:10.1128/JCM.00364-07
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Leptotrichia amnionii, an Emerging Pathogen of the Female Urogenital Tract
Carina M. Thilesen, Mikael Nicolaidis, Jan Eirik Lökebö, Enevold Falsen, Anne Tomine Jorde, and Fredrik Müller
J. Clin. Microbiol. July 2007 45: 2344-2347; published ahead of print May 23, 2007, doi:10.1128/JCM.00167-07
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Cystitis Caused by Aeromonas caviae
Khalifa Al-Benwan, Sharon Abbott, J. Michael Janda, Geert Huys, and M. John Albert
J. Clin. Microbiol. July 2007 45: 2348-2350; published ahead of print May 23, 2007, doi:10.1128/JCM.00480-07
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Letters To The Editor:

Analysis of Phenotypic Variants of the Serogroup C ET-15 Clone of Neisseria meningitidis by Pulsed-Field Gel Electrophoresis
Marissa L. Cameron and Raymond S. W. Tsang
J. Clin. Microbiol. July 2007 45: 2351-2352; published ahead of print May 9, 2007, doi:10.1128/JCM.00908-07
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Errata:

Neisseria Species Identification Assay for the Confirmation of Neisseria gonorrhoeae-Positive Results of the COBAS Amplicor PCR
Kathy A. Mangold, MaryAnn Regner, Mohammed Tajuddin, Aamair M. Tajuddin, Lawrence Jennings, Hongyan Du, and Karen L. Kaul
J. Clin. Microbiol. July 2007 45: 2353
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Retraction:

Diversity in Indian Equine Rotaviruses: Identification of Genotype G10,P6[1] and G1 Strains and a New VP7 Genotype (G16) Strain in Specimens from Diarrheic Foals in India
B.R. Gulati, R. Deepa, B.K. Singh, and C. Durga Rao
J. Clin. Microbiol. July 2007 45: 2354
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