JCM -- Table of Contents (February 1 2009, 47 [2])

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Contents: February 2009, Volume 47, Issue 2

       Virology

       Bacteriology

       Mycobacteriology and Aerobic Actinomycetes

       Mycology

       Epidemiology

       Chlamydiology and Rickettsiology

       Clinical Veterinary Microbiology

       Parasitology

       Case Reports

       Letters To The Editor

       Author's Correction

Other Issues

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Virology:

Analysis of Human Papillomavirus Type 18 Load and Integration Status from Low-Grade Cervical Lesion to Invasive Cervical Cancer
Jo L. K. Cheung, Tak-Hong Cheung, Candy W. Y. Ng, Mei Y. Yu, Martin C. S. Wong, Shing-Shun N. Siu, So-Fan Yim, and Paul K. S. Chan
J. Clin. Microbiol. February 2009 47: 287-293; published ahead of print November 26, 2008, doi:10.1128/JCM.01531-08
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Classification of Fowl Adenovirus Serotypes by Use of High-Resolution Melting-Curve Analysis of the Hexon Gene Region
Penelope A. Steer, Naomi C. Kirkpatrick, Denise O'Rourke, and Amir H. Noormohammadi
J. Clin. Microbiol. February 2009 47: 311-321; published ahead of print November 26, 2008, doi:10.1128/JCM.01567-08
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Design and Validation of a Microarray for Detection, Hemagglutinin Subtyping, and Pathotyping of Avian Influenza Viruses
Astrid Gall, Bernd Hoffmann, Timm Harder, Christian Grund, Dirk Höper, and Martin Beer
J. Clin. Microbiol. February 2009 47: 327-334; published ahead of print December 3, 2008, doi:10.1128/JCM.01330-08
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Cocirculation of Antigenic Variants and the Vaccine-Type Virus during the 2004-2005 Influenza B Virus Epidemics in Japan
Naoko Nakagawa, Natsumi Higashi, and Toshimasa Nakagawa
J. Clin. Microbiol. February 2009 47: 352-357; published ahead of print December 17, 2008, doi:10.1128/JCM.01357-08
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Abbott RealTime Hepatitis C Virus (HCV) and Roche Cobas AmpliPrep/Cobas TaqMan HCV Assays for Prediction of Sustained Virological Response to Pegylated Interferon and Ribavirin in Chronic Hepatitis C Patients
Kentaro Matsuura, Yasuhito Tanaka, Izumi Hasegawa, Tomoyoshi Ohno, Hiroshi Tokuda, Fuat Kurbanov, Fuminaka Sugauchi, Shunsuke Nojiri, Takashi Joh, and Masashi Mizokami
J. Clin. Microbiol. February 2009 47: 385-389; published ahead of print December 17, 2008, doi:10.1128/JCM.01753-08
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Multiplex Assay for Simultaneously Typing and Subtyping Influenza Viruses by Use of an Electronic Microarray
Ying Huang, Huong Tang, Stuart Duffy, Yuwen Hong, Sylvia Norman, Madhu Ghosh, Jie He, Michael Bose, Kelly J. Henrickson, Jiang Fan, Andrea J. Kraft, William G. Weisburg, and Elizabeth L. Mather
J. Clin. Microbiol. February 2009 47: 390-396; published ahead of print December 10, 2008, doi:10.1128/JCM.01807-08
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Development of a Rapid High-Throughput Method for High-Resolution Melting Analysis for Routine Detection and Genotyping of Noroviruses
Etsuko Tajiri-Utagawa, Masayuki Hara, Kuniaki Takahashi, Mayumi Watanabe, and Takaji Wakita
J. Clin. Microbiol. February 2009 47: 435-440; published ahead of print December 10, 2008, doi:10.1128/JCM.01247-08
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Diagnosis of Human Immunodeficiency Virus Type 1 Infection in Infants by Use of Dried Blood Spots and an Ultrasensitive p24 Antigen Assay
Ada Cachafeiro, Gayle G. Sherman, Annette H. Sohn, Consuelo Beck-Sague, and Susan A. Fiscus
J. Clin. Microbiol. February 2009 47: 459-462; published ahead of print December 10, 2008, doi:10.1128/JCM.01181-08
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In Vivo and In Vitro Alterations in Influenza A/H3N2 Virus M2 and Hemagglutinin Genes: Effect of Passage in MDCK-SIAT1 Cells and Conventional MDCK Cells
Danjuan Li, Reiko Saito, Yasushi Suzuki, Isamu Sato, Hassan Zaraket, Clyde Dapat, Isolde Ma Caperig-Dapat, and Hiroshi Suzuki
J. Clin. Microbiol. February 2009 47: 466-468; published ahead of print December 17, 2008, doi:10.1128/JCM.00892-08
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Use of the Novel INNO-LiPA Line Probe Assay for Detection of Hepatitis B Virus Variants That Confer Resistance to Entecavir Therapy
Rosendo Jardi, Francisco Rodriguez-Frias, David Tabernero, Maria Homs, Melanie Schaper, Rafael Esteban, and Maria Buti
J. Clin. Microbiol. February 2009 47: 485-488; published ahead of print December 3, 2008, doi:10.1128/JCM.01678-08
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Bacteriology:

Identification of Plasmid-Mediated AmpC β-Lactamases in Escherichia coli, Klebsiella spp., and Proteus Species Can Potentially Improve Reporting of Cephalosporin Susceptibility Testing Results
Fred C. Tenover, Shannon L. Emery, Carol A. Spiegel, Patricia A. Bradford, Samantha Eells, Andrea Endimiani, Robert A. Bonomo, and John E. McGowan, Jr.
J. Clin. Microbiol. February 2009 47: 294-299; published ahead of print November 26, 2008, doi:10.1128/JCM.01797-08
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Phylogeny and Identification of Pantoea Species and Typing of Pantoea agglomerans Strains by Multilocus Gene Sequencing
Alexis Delétoile, Dominique Decré, Stéphanie Courant, Virginie Passet, Jennifer Audo, Patrick Grimont, Guillaume Arlet, and Sylvain Brisse
J. Clin. Microbiol. February 2009 47: 300-310; published ahead of print December 3, 2008, doi:10.1128/JCM.01916-08
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Development and Evaluation of a Real-Time PCR Assay for Detection of Klebsiella pneumoniae Carbapenemase Genes
Justin M. Cole, Audrey N. Schuetz, Charles E. Hill, and Frederick S. Nolte
J. Clin. Microbiol. February 2009 47: 322-326; published ahead of print November 26, 2008, doi:10.1128/JCM.01550-08
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Longer Intestinal Persistence of Enterococcus faecalis Compared to Enterococcus faecium Clones in Intensive-Care-Unit Patients
Patricia Ruiz-Garbajosa, Rosa del Campo, Teresa M. Coque, Angel Asensio, Marc Bonten, Rob Willems, Fernando Baquero, and Rafael Cantón
J. Clin. Microbiol. February 2009 47: 345-351; published ahead of print December 3, 2008, doi:10.1128/JCM.01597-08
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Unreliable Extended-Spectrum β-Lactamase Detection in the Presence of Plasmid-Mediated AmpC in Escherichia coli Clinical Isolates
F. J. L. Robberts, P. C. Kohner, and R. Patel
J. Clin. Microbiol. February 2009 47: 358-361; published ahead of print December 24, 2008, doi:10.1128/JCM.01687-08
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Evaluation of Boronic Acid Disk Tests for Differentiating KPC-Possessing Klebsiella pneumoniae Isolates in the Clinical Laboratory
Athanassios Tsakris, Ioulia Kristo, Aggeliki Poulou, Katerina Themeli-Digalaki, Alexandros Ikonomidis, Dimitra Petropoulou, Spyros Pournaras, and Danai Sofianou
J. Clin. Microbiol. February 2009 47: 362-367; published ahead of print December 10, 2008, doi:10.1128/JCM.01922-08
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Utility of Pyrosequencing in Identifying Bacteria Directly from Positive Blood Culture Bottles
J. A. Jordan, J. Jones-Laughner, and M. B. Durso
J. Clin. Microbiol. February 2009 47: 368-372; published ahead of print December 17, 2008, doi:10.1128/JCM.01991-08
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Comparison of a Commercial Real-Time PCR Assay for tcdB Detection to a Cell Culture Cytotoxicity Assay and Toxigenic Culture for Direct Detection of Toxin-Producing Clostridium difficile in Clinical Samples
Paul D. Stamper, Romina Alcabasa, Deborah Aird, Wisal Babiker, Jennifer Wehrlin, Ijeoma Ikpeama, and Karen C. Carroll
J. Clin. Microbiol. February 2009 47: 373-378; published ahead of print December 10, 2008, doi:10.1128/JCM.01613-08
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Effective and Reduced-Cost Modified Selective Medium for Isolation of Clostridium difficile
Michelle M. Nerandzic and Curtis J. Donskey
J. Clin. Microbiol. February 2009 47: 397-400; published ahead of print December 10, 2008, doi:10.1128/JCM.01591-08
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Comparison of Commercial and In-House Real-Time PCR Assays Used for Detection of Mycoplasma pneumoniae
Roger Dumke and Enno Jacobs
J. Clin. Microbiol. February 2009 47: 441-444; published ahead of print December 10, 2008, doi:10.1128/JCM.01989-08
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Detection and Isolation of Campylobacter Species Other than C. jejuni from Children with Crohn's Disease
Li Zhang, Si Ming Man, Andrew S. Day, Steven T. Leach, Daniel A. Lemberg, Shoma Dutt, Michael Stormon, Anthony Otley, Edward V. O'Loughlin, Annabel Magoffin, Patrick H. Y. Ng, and Hazel Mitchell
J. Clin. Microbiol. February 2009 47: 453-455; published ahead of print December 3, 2008, doi:10.1128/JCM.01949-08
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Evaluation and Implementation of a Chromogenic Agar Medium for Salmonella Detection in Stool in Routine Laboratory Diagnostics
Saskia van Dijk, Marjan J. Bruins, and Gijs J. H. M. Ruijs
J. Clin. Microbiol. February 2009 47: 456-458; published ahead of print December 17, 2008, doi:10.1128/JCM.01643-08
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B:2a:P1.5 Meningococcal Strains Likely Arisen from Capsular Switching Event Still Spreading in Spain
Jesús Castilla, Julio A. Vázquez, Celia Salcedo, Manuel García Cenoz, José Javier García Irure, Luis Torroba, Xabier Beristain, Raquel Abad, and Aurelio Barricarte
J. Clin. Microbiol. February 2009 47: 463-465; published ahead of print December 17, 2008, doi:10.1128/JCM.01495-08
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Rapid Emergence of emm84 among Invasive Streptococcus pyogenes Infections in Finland
Tuula Siljander, Outi Lyytikäinen, Susanna Vähäkuopus, Petrus Säilä, Jari Jalava, and Jaana Vuopio-Varkila
J. Clin. Microbiol. February 2009 47: 477-480; published ahead of print December 10, 2008, doi:10.1128/JCM.01663-08
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Comparison of Neisseria gonorrhoeae Multiantigen Sequence Typing and porB Sequence Analysis for Identification of Clusters of N. gonorrhoeae Isolates
Mingmin Liao, Sarah Helgeson, Wei-Ming Gu, Yang Yang, Ann M. Jolly, and Jo-Anne R. Dillon
J. Clin. Microbiol. February 2009 47: 489-491; published ahead of print December 3, 2008, doi:10.1128/JCM.01612-08
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Mycobacteriology and Aerobic Actinomycetes:

Predominance of Mycobacterium tuberculosis EAI and Beijing Lineages in Yangon, Myanmar
Sabai Phyu, Ruth Stavrum, Thandar Lwin, Øyvind S. Svendsen, Ti Ti, and Harleen M. S. Grewal
J. Clin. Microbiol. February 2009 47: 335-344; published ahead of print November 26, 2008, doi:10.1128/JCM.01812-08
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Evaluation of an Immunochromatographic Assay Kit for Rapid Identification of Mycobacterium tuberculosis Complex in Clinical Isolates
Mi Young Park, Young Jin Kim, Sang Hyun Hwang, Hyoung Hoi Kim, Eun Yup Lee, Seok Hoon Jeong, and Chulhun L. Chang
J. Clin. Microbiol. February 2009 47: 481-484; published ahead of print December 3, 2008, doi:10.1128/JCM.01253-08
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Mycology:

Value of Serial Quantification of Fungal DNA by a Real-Time PCR-Based Technique for Early Diagnosis of Invasive Aspergillosis in Patients with Febrile Neutropenia
Manuel Cuenca-Estrella, Yolanda Meije, Carmen Diaz-Pedroche, Alicia Gomez-Lopez, Maria J. Buitrago, Leticia Bernal-Martinez, Carlos Grande, Rafael San Juan, Manuel Lizasoain, Juan L. Rodriguez-Tudela, and Jose M. Aguado
J. Clin. Microbiol. February 2009 47: 379-384; published ahead of print December 24, 2008, doi:10.1128/JCM.01716-08
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Epidemiology:

Molecular Characterization and Antimicrobial Susceptibility of Salmonella Isolates from Infections in Humans in Henan Province, China
Shengli Xia, Rene S. Hendriksen, Zhiqiang Xie, Lili Huang, Jin Zhang, Wanshen Guo, Bianli Xu, Lu Ran, and Frank M. Aarestrup
J. Clin. Microbiol. February 2009 47: 401-409; published ahead of print December 10, 2008, doi:10.1128/JCM.01099-08
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Genomics-Based Molecular Epidemiology of Campylobacter jejuni Isolates from Feedlot Cattle and from People in Alberta, Canada
Sherry J. Hannon, Eduardo N. Taboada, Margaret L. Russell, Brenda Allan, Cheryl Waldner, Heather L. Wilson, Andrew Potter, Lorne Babiuk, and Hugh G. G. Townsend
J. Clin. Microbiol. February 2009 47: 410-420; published ahead of print November 26, 2008, doi:10.1128/JCM.01432-08
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Molecular Epidemiology of Norovirus Gastroenteritis Investigated Using Samples Collected from Children in Tunisia during a Four-Year Period: Detection of the Norovirus Variant GGII.4 Hunter as Early as January 2003
Khira Sdiri-Loulizi, Katia Ambert-Balay, Hakima Gharbi-Khelifi, Nabil Sakly, Mouna Hassine, Slaheddine Chouchane, Mohamed Neji Guediche, Pierre Pothier, and Mahjoub Aouni
J. Clin. Microbiol. February 2009 47: 421-429; published ahead of print December 24, 2008, doi:10.1128/JCM.01852-08
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Temporal Trends and Molecular Epidemiology of Recently Described Serotype 6C of Streptococcus pneumoniae
Sónia Nunes, Carina Valente, Raquel Sá-Leão, and Hermínia de Lencastre
J. Clin. Microbiol. February 2009 47: 472-474; published ahead of print December 10, 2008, doi:10.1128/JCM.01984-08
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Chlamydiology and Rickettsiology:

Association of High Orientia tsutsugamushi DNA Loads with Disease of Greater Severity in Adults with Scrub Typhus
Piengchan Sonthayanon, Wirongrong Chierakul, Vanaporn Wuthiekanun, Kriangsak Phimda, Sasithon Pukrittayakamee, Nicholas P. Day, and Sharon J. Peacock
J. Clin. Microbiol. February 2009 47: 430-434; published ahead of print December 17, 2008, doi:10.1128/JCM.01927-08
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Clinic-Based Evaluation of a Rapid Point-of-Care Test for Detection of Chlamydia trachomatis in Specimens from Sex Workers in Escuintla, Guatemala
M. Sabidó, G. Hernández, V. González, X. Vallès, A. Montoliu, J. Figuerola, V. Isern, B. Viñado, L. Figueroa, and J. Casabona
J. Clin. Microbiol. February 2009 47: 475-476; published ahead of print December 3, 2008, doi:10.1128/JCM.01975-08
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Clinical Veterinary Microbiology:

Mycoplasma agalactiae p40 Gene, a Novel Marker for Diagnosis of Contagious Agalactia in Sheep by Real-Time PCR: Assessment of Analytical Performance and In-House Validation Using Naturally Contaminated Milk Samples
Katarína Oravcová, Lorena López-Enríquez, David Rodríguez-Lázaro, and Marta Hernández
J. Clin. Microbiol. February 2009 47: 445-450; published ahead of print November 19, 2008, doi:10.1128/JCM.01442-08
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Molecular Diagnostic Identification of Staphylococcus pseudintermedius
Jeanette Bannoehr, Alessia Franco, Manuela Iurescia, Antonio Battisti, and J. Ross Fitzgerald
J. Clin. Microbiol. February 2009 47: 469-471; published ahead of print December 17, 2008, doi:10.1128/JCM.01915-08
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Parasitology:

Evaluation of a Screening Test for Detection of Giardia and Cryptosporidium Parasites
Sojin Youn, Mamun Kabir, Rashidul Haque, and William A. Petri, Jr.
J. Clin. Microbiol. February 2009 47: 451-452; published ahead of print December 3, 2008, doi:10.1128/JCM.01736-08
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Case Reports:

Fourteen Years of Severe Arthralgia in a Man without Gastrointestinal Symptoms: Atypical Whipple's Disease
Fabiola Mancini, Serena Sbaragli, Gilberto Colivicchi, Antonio Cassone, and Alessandra Ciervo
J. Clin. Microbiol. February 2009 47: 492-495; published ahead of print December 17, 2008, doi:10.1128/JCM.01833-08
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Severe Pneumonia with Leptotrichia sp. Detected Predominantly in Bronchoalveolar Lavage Fluid by Use of 16S rRNA Gene Sequencing Analysis
Toshinori Kawanami, Kazumasa Fukuda, Kazuhiro Yatera, Takashi Kido, Chiharu Yoshii, Hatsumi Taniguchi, and Masamitsu Kido
J. Clin. Microbiol. February 2009 47: 496-498; published ahead of print December 3, 2008, doi:10.1128/JCM.01429-08
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Gordonia araii Infection Associated with an Orthopedic Device and Review of the Literature on Medical Device-Associated Gordonia Infections
Deanna P. Jannat-Khah, Eric S. Halsey, Brent A. Lasker, Arnold G. Steigerwalt, Hans P. Hinrikson, and June M. Brown
J. Clin. Microbiol. February 2009 47: 499-502; published ahead of print December 24, 2008, doi:10.1128/JCM.01504-08
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Case of Indolent Endocarditis Due to Pseudomonas stutzeri with Genetic Evidence of Relapse after 4 Years
David Grimaldi, Isabelle Podglajen, Agnès Aubert, Annie Buu-Hoï, Benoit Diebold, and Jean-Luc Mainardi
J. Clin. Microbiol. February 2009 47: 503-504; published ahead of print December 3, 2008, doi:10.1128/JCM.00707-08
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Transmission of Coccidioidomycosis to a Human via a Cat Bite
Adriana Gaidici and Michael A. Saubolle
J. Clin. Microbiol. February 2009 47: 505-506; published ahead of print December 3, 2008, doi:10.1128/JCM.01860-08
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Evolution of Central Nervous System Multidrug-Resistant Mycobacterium tuberculosis and Late Relapse of Cryptic Prosthetic Hip Joint Tuberculosis: Complications during Treatment of Disseminated Isoniazid-Resistant Tuberculosis in an Immunocompromised Host
Arlo Upton, Andrew Woodhouse, Ross Vaughan, Sandie Newton, and Rod Ellis-Pegler
J. Clin. Microbiol. February 2009 47: 507-510; published ahead of print December 24, 2008, doi:10.1128/JCM.01473-08
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Clostridium glycolicum Isolated from a Patient with Otogenic Brain Abscesses
C. Van Leer, A. M. J. Wensing, J. P. van Leeuwen, E. G. J. Zandbergen, and C. M. A. Swanink
J. Clin. Microbiol. February 2009 47: 511-513; published ahead of print December 24, 2008, doi:10.1128/JCM.00660-08
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Letters To The Editor:

Case Report of Aurantimonas altamirensis Bloodstream Infection
Rodrigo E. Mendes, Gerald A. Denys, Thomas R. Fritsche, and Ronald N. Jones
J. Clin. Microbiol. February 2009 47: 514-515; published ahead of print November 26, 2008, doi:10.1128/JCM.02171-08
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Association between Streptococcus bovis and Colon Cancer
Annemarie Boleij, Renée M. J. Schaeps, and Harold Tjalsma
J. Clin. Microbiol. February 2009 47: 516
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Performance of Modified Universal Sample Processing Method in a Field Study in Uganda
Soumitesh Chakravorty, Jaya S. Tyagi, Adithya Cattamanchi, J. Lucian Davis, William Worodria, Samuel Yoo, and Laurence Huang
J. Clin. Microbiol. February 2009 47: 517-518;
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Author's Correction:

Multicenter Comparison of PCR Assays for Detection of Human Herpesvirus 6 DNA in Serum
Louis Flamand, Annie Gravel, David Boutolleau, Roberto Alvarez-Lafuente, Steve Jacobson, Mauro S. Malnati, Debra Kohn, Yi-Wei Tang, Tetsushi Yoshikawa, and Dharam Ablashi
J. Clin. Microbiol. February 2009 47: 519
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.