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Virology

Emergence of Novel Human Group A Rotavirus G12 Strains in India

Soma Das, V. Varghese, S. Chaudhury, P. Barman, S. Mahapatra, K. Kojima, S. K. Bhattacharya, T. Krishnan, R. K. Ratho, G. P. Chhotray, A. C. Phukan, N. Kobayashi, T. N. Naik
Soma Das
1Division of Virology
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V. Varghese
1Division of Virology
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S. Chaudhury
1Division of Virology
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P. Barman
1Division of Virology
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S. Mahapatra
2Division of Microbiology, Regional Medical Research Centre, Bhubaneshwar 751023
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K. Kojima
3Department of Hygiene, Sapporo Medical University School of Medicine, Sapporo 060, Japan
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S. K. Bhattacharya
4Division of Clinical Medicine, National Institute of Cholera and Enteric Diseases
5ICMR Virus Unit, GB-4 ID and BG Hospital Campus, Calcutta 700010
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T. Krishnan
1Division of Virology
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R. K. Ratho
6Department of Virology, Post-Graduate Institute of Medical Education and Research, Chandigarh 160012
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G. P. Chhotray
2Division of Microbiology, Regional Medical Research Centre, Bhubaneshwar 751023
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A. C. Phukan
7Division of Microbiology, Regional Medical Research Centre for North-East, Dibrugarh 768001, India
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N. Kobayashi
3Department of Hygiene, Sapporo Medical University School of Medicine, Sapporo 060, Japan
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T. N. Naik
1Division of Virology
5ICMR Virus Unit, GB-4 ID and BG Hospital Campus, Calcutta 700010
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  • For correspondence: tnaik@satyam.net.in
DOI: 10.1128/JCM.41.6.2760-2762.2003
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    FIG. 1.

    Phylogenetic tree of VP7 gene sequences representing different serotype-specific rotaviruses. The bar indicates the variation scale.

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  • TABLE 1.

    Nucleotide and amino acid homology of VP7 sequences of group A rotaviruses (G1 to G15 genotype-specific prototype strains) with three G12 strains

    VP7 genotypePrototype strainHomology (%)a with:
    ISO 1ISO 2ISO 5
    ntaantaantaa
    G1Wa757775777577
    G2S2727572767376
    G3AU1758075817481
    G4ST3727572757375
    G5OSU757975797579
    G6PA151758175817581
    G7Ty-1656765676668
    G869M727773787278
    G9WI61768176817681
    G10Mc35737973787379
    G11YM738073807480
    G13L338757875787578
    G14F123747975797579
    G15Hg18707370737173
    G12L26 90 92 90 92 90 92
    G12T152 97 98 97 98 97 98
    G12Se585 99 99 99 99 98 99
    • ↵ a nt, nucleotide level; aa, amino acid level. Values ≥90% are in boldface.

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Emergence of Novel Human Group A Rotavirus G12 Strains in India
Soma Das, V. Varghese, S. Chaudhury, P. Barman, S. Mahapatra, K. Kojima, S. K. Bhattacharya, T. Krishnan, R. K. Ratho, G. P. Chhotray, A. C. Phukan, N. Kobayashi, T. N. Naik
Journal of Clinical Microbiology Jun 2003, 41 (6) 2760-2762; DOI: 10.1128/JCM.41.6.2760-2762.2003

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Emergence of Novel Human Group A Rotavirus G12 Strains in India
Soma Das, V. Varghese, S. Chaudhury, P. Barman, S. Mahapatra, K. Kojima, S. K. Bhattacharya, T. Krishnan, R. K. Ratho, G. P. Chhotray, A. C. Phukan, N. Kobayashi, T. N. Naik
Journal of Clinical Microbiology Jun 2003, 41 (6) 2760-2762; DOI: 10.1128/JCM.41.6.2760-2762.2003
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KEYWORDS

Antigens, Viral
Capsid Proteins
diarrhea
rotavirus

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