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Table of Contents

January 2008; Volume 46,Issue 1

Instructions To Authors

  • INSTRUCTIONS TO AUTHORS
    JOURNAL OF CLINICAL MICROBIOLOGY

Virology

  • Virology
    “Mid-G” Region Sequences of the Glycoprotein Gene of Austrian Infectious Hematopoietic Necrosis Virus Isolates Form Two Lineages within European Isolates and Are Distinct from American and Asian Lineages
    Jolanta Kolodziejek, Oskar Schachner, Ralf Dürrwald, Muna Latif, Norbert Nowotny
  • Virology
    Discrimination of Antibody to Herpes B Virus from Antibody to Herpes Simplex Virus Types 1 and 2 in Human and Macaque Sera
    Akikazu Fujima, Yoshitsugu Ochiai, Aya Saito, Yuki Omori, Atsuya Noda, Yukumasa Kazuyama, Hiroshi Shoji, Kiyoshi Tanabayashi, Fukiko Ueda, Yasuhiro Yoshikawa, Ryo Hondo
  • Virology
    Prospective Identification of Enteroviruses Involved in Meningitis in 2006 through Direct Genotyping in Cerebrospinal Fluid
    Audrey Mirand, Cécile Henquell, Christine Archimbaud, Martine Chambon, Françoise Charbonne, Hélène Peigue-Lafeuille, Jean-Luc Bailly
  • Virology
    Evidence from Multiplex Molecular Assays for Complex Multipathogen Interactions in Acute Respiratory Infections
    John D. Brunstein, Christy L. Cline, Steven McKinney, Eva Thomas
  • Virology
    Comparison of Linear Array and Line Blot Assay for Detection of Human Papillomavirus and Diagnosis of Cervical Precancer and Cancer in the Atypical Squamous Cell of Undetermined Significance and Low-Grade Squamous Intraepithelial Lesion Triage Study
    Philip E. Castle, Patti E. Gravitt, Diane Solomon, Cosette M. Wheeler, Mark Schiffman
  • Virology
    Multicenter Comparison of Different Real-Time PCR Assays for Quantitative Detection of Epstein-Barr Virus
    R. T. Hayden, K. M. Hokanson, S. B. Pounds, M. J Bankowski, S. W. Belzer, J. Carr, D. Diorio, M. S. Forman, Y. Joshi, D. Hillyard, R. L. Hodinka, M. N. Nikiforova, C. A. Romain, J. Stevenson, A. Valsamakis, H. H. Balfour
    and for the U.S. EBV Working Group
  • Virology
    Novel Light-Upon-Extension Real-Time PCR Assays for Detection and Quantification of Genogroup I and II Noroviruses in Clinical Specimens
    Johan Nordgren, Filemón Bucardo, Olaf Dienus, Lennart Svensson, Per-Eric Lindgren
  • Virology
    Molecular Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) and HIV-2 in Yaoundé, Cameroon: Evidence of Major Drug Resistance Mutations in Newly Diagnosed Patients Infected with Subtypes Other than Subtype B
    Nicaise Ndembi, Awet Abraha, Heather Pilch, Hiroshi Ichimura, Dora Mbanya, Lazare Kaptue, Robert Salata, Eric J. Arts
  • Virology
    Evaluation of a New Assay in Comparison with Reverse Hybridization and Sequencing Methods for Hepatitis C Virus Genotyping Targeting Both 5′ Noncoding and Nonstructural 5b Genomic Regions
    Elisa Martró, Victoria González, Andrew J. Buckton, Verónica Saludes, Gema Fernández, Lurdes Matas, Ramón Planas, Vicenç Ausina
  • Virology
    Prevalence, Types, and RNA Concentrations of Human Parechoviruses, Including a Sixth Parechovirus Type, in Stool Samples from Patients with Acute Enteritis
    Sigrid Baumgarte, Luciano Kleber de Souza Luna, Klaus Grywna, Marcus Panning, Jan Felix Drexler, Claudia Karsten, Hans Iko Huppertz, Christian Drosten
  • Virology
    Evaluation of a Commercialized In Situ Hybridization Assay for Detecting Human Papillomavirus DNA in Tissue Specimens from Patients with Cervical Intraepithelial Neoplasia and Cervical Carcinoma
    Ming Guo, Yun Gong, Michael Deavers, Elvio G. Silva, Yee Jee Jan, David E. Cogdell, Rajyalashmi Luthra, E. Lin, Hung Cheng Lai, Wei Zhang, Nour Sneige
  • Virology
    Sensitive and Specific Enzyme-Linked Immunosorbent Assay Using Chemiluminescence for Detection of Severe Acute Respiratory Syndrome Viral Infection
    Kotaro Fujimoto, Kwok-Hung Chan, Kazuhiko Takeda, Kam-Fai Lo, Raymond H. K. Leung, Takashi Okamoto
  • Virology
    Identification of Adenoviruses in Specimens from High-Risk Pediatric Stem Cell Transplant Recipients and Controls
    Xiaotian Zheng, Xiaoyan Lu, Dean D. Erdman, Evan J. Anderson, Judith A. Guzman-Cottrill, Morris Kletzel, Ben Z. Katz
  • Virology
    Novel Varicella-Zoster Virus Glycoprotein E Gene Mutations Associated with Genotypes A and D
    Jonas Schmidt-Chanasit, Karoline Bleymehl, Susanne G. Schäd, Gerd Gross, Rainer G. Ulrich, Hans Wilhelm Doerr
  • Virology
    High Rate of Human Bocavirus and Adenovirus Coinfection in Hospitalized Israeli Children
    Musa Y. Hindiyeh, Nathan Keller, Michal Mandelboim, Daniela Ram, Jana Rubinov, Liora Regev, Virginia Levy, Sara Orzitzer, Hilda Shaharabani, Roberto Azar, Ella Mendelson, Zehava Grossman
  • Virology
    Comparison of the Human Immunodeficiency Virus (HIV) Type 1-Specific Immunoglobulin G Capture Enzyme-Linked Immunosorbent Assay and the Avidity Index Method for Identification of Recent HIV Infections
    Stephan Loschen, Jörg Bätzing-Feigenbaum, Gabriele Poggensee, Christiane Cordes, Bettina Hintsche, Michael Rausch, Stephan Dupke, Silvia Gohlke-Micknis, Jana Rödig, Osamah Hamouda, Claudia Kücherer
  • Virology
    Rare AU-1-Like G3P[9] Human Rotaviruses with a Kun-Like NSP4 Gene Detected in Children with Diarrhea in Italy
    S. De Grazia, G. M. Giammanco, V. Martella, S. Ramirez, C. Colomba, A. Cascio, S. Arista
  • Virology
    Detection of Respiratory Viruses and Atypical Bacteria in Children's Tonsils and Adenoids
    Lorenzo Drago, Susanna Esposito, Elena De Vecchi, Paola Marchisio, Francesco Blasi, Elena Baggi, Pasquale Capaccio, Lorenzo Pignataro

Bacteriology

  • Bacteriology
    fimA Genotypes and Multilocus Sequence Types of Porphyromonas gingivalis from Patients with Periodontitis
    Morten Enersen, Ingar Olsen, Øyvind Kvalheim, Dominique A. Caugant
  • Bacteriology
    Novel Brucella Strain (BO1) Associated with a Prosthetic Breast Implant Infection
    Barun K. De, Larry Stauffer, Mark S. Koylass, Susan E. Sharp, Jay E. Gee, Leta O. Helsel, Arnold G. Steigerwalt, Robert Vega, Thomas A. Clark, Maryam I. Daneshvar, Patricia P. Wilkins, Adrian M. Whatmore
  • Bacteriology
    Epidemiology of European Community-Associated Methicillin-Resistant Staphylococcus aureus Clonal Complex 80 Type IV Strains Isolated in Denmark from 1993 to 2004
    A. R. Larsen, S. Böcher, M. Stegger, R. Goering, L. V. Pallesen, R. Skov
  • Bacteriology
    Clinical and Epidemiological Aspects of Invasive Streptococcus pyogenes Infections in Denmark during 2003 and 2004
    Bogdan Luca-Harari, Kim Ekelund, Mark van der Linden, Margit Staum-Kaltoft, Anette M. Hammerum, Aftab Jasir
  • Bacteriology
    Molecular Epidemiology of Escherichia coli Producing Extended-Spectrum β-Lactamases Isolated in Rome, Italy
    Alessandra Carattoli, Aurora García-Fernández, Paola Varesi, Daniela Fortini, Serena Gerardi, Adriano Penni, Carlo Mancini, Alessandra Giordano
  • Bacteriology
    Comparison of Molecular Typing Methods for Characterization of Staphylococcus epidermidis: Proposal for Clone Definition
    M. Miragaia, J. A. Carriço, J. C. Thomas, I. Couto, M. C. Enright, H. de Lencastre
  • Bacteriology
    Analysis of Typing Methods for Epidemiological Surveillance of both Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Strains
    Nuno A. Faria, João A. Carrico, Duarte C. Oliveira, Mário Ramirez, Hermínia de Lencastre
  • Bacteriology
    Development of Real-Time Multiplex Nucleic Acid Sequence-Based Amplification for Detection of Mycoplasma pneumoniae, Chlamydophila pneumoniae, and Legionella spp. in Respiratory Specimens
    K. Loens, T. Beck, D. Ursi, M. Overdijk, P. Sillekens, H. Goossens, M. Ieven
  • Bacteriology
    Emergence of Clonal Complex 17 Enterococcus faecium in The Netherlands
    Janetta Top, Rob Willems, Saskia van der Velden, Miranda Asbroek, Marc Bonten
  • Bacteriology
    Evaluation of Endocarditis Caused by Methicillin-Susceptible Staphylococcus aureus Developing Nonsusceptibility to Daptomycin
    George Sakoulas, Warren Rose, Michael J. Rybak, Satish Pillai, Jeff Alder, Robert C. Moellering, George M. Eliopoulos
  • Bacteriology
    Nocardia cyriacigeorgica, an Emerging Pathogen in the United States
    Robert Schlaberg, Richard C. Huard, Phyllis Della-Latta
  • Bacteriology
    Evaluation of a Chlamydophila psittaci Infection Diagnostic Platform for Zoonotic Risk Assessment
    Kristel Verminnen, Barbara Duquenne, David De Keukeleire, Birgitta Duim, Yvonne Pannekoek, Lutgart Braeckman, Daisy Vanrompay
  • Bacteriology
    Real-Time PCR Assays of Single-Nucleotide Polymorphisms Defining the Major Brucella Clades
    Jeffrey T. Foster, Richard T. Okinaka, Rita Svensson, Kathryn Shaw, Barun K. De, Richard A. Robison, William S. Probert, Leo J. Kenefic, William D. Brown, Paul Keim
  • Bacteriology
    Evaluation of the Vitek 2 System with a Variety of Staphylococcus Species
    Julien Delmas, Jean Paul Chacornac, Frédéric Robin, Philippe Giammarinaro, Régine Talon, Richard Bonnet
  • Bacteriology
    Rapid and Reliable Diagnostic Algorithm for Detection of Clostridium difficile
    Lukas Fenner, Andreas F. Widmer, Gisela Goy, Sonja Rudin, Reno Frei
  • Bacteriology
    Analysis of Toxigenic Corynebacterium ulcerans Strains Revealing Potential for False-Negative Real-Time PCR Results
    Pamela K. Cassiday, Lucia C. Pawloski, Tejpratap Tiwari, Gary N. Sanden, Patricia P. Wilkins
  • Bacteriology
    Hidden VIM-1 Metallo-β-Lactamase Phenotypes among Acinetobacter baumannii Clinical Isolates
    Alexandros Ikonomidis, Eleni Ntokou, Antonios N. Maniatis, Athanassios Tsakris, Spyros Pournaras
  • Bacteriology
    Comparison of BD GeneOhm Methicillin-Resistant Staphylococcus aureus (MRSA) PCR versus the CHROMagar MRSA Assay for Screening Patients for the Presence of MRSA Strains
    John M. Boyce, Nancy L. Havill
  • Bacteriology
    Emergence of Fluoroquinolone-Resistant Haemophilus influenzae Strains among Elderly Patients but Not among Children
    Shin-ichi Yokota, Yasuo Ohkoshi, Kiyoshi Sato, Nobuhiro Fujii
  • Bacteriology
    Clostridium perfringens Type A Strains Carrying a Plasmid-Borne Enterotoxin Gene (Genotype IS1151-cpe or IS1470-like-cpe) as a Common Cause of Food Poisoning
    Päivi Lahti, Annamari Heikinheimo, Tuula Johansson, Hannu Korkeala
  • Bacteriology
    Clinical Impact of a PCR Assay for Rapid Identification of Klebsiella pneumoniae in Blood Cultures
    A. Neuberger, I. Oren, H. Sprecher

Mycology

  • Mycology
    Multicenter Evaluation of the Candida albicans/Candida glabrata Peptide Nucleic Acid Fluorescent In Situ Hybridization Method for Simultaneous Dual-Color Identification of C. albicans and C. glabrata Directly from Blood Culture Bottles
    Janeen R. Shepard, Rachel M. Addison, Barbara D. Alexander, Phyllis Della-Latta, Michael Gherna, Gerhard Haase, Gerri Hall, Jennifer K. Johnson, William G. Merz, Heidrun Peltroche-Llacsahuanga, Henrik Stender, Richard A. Venezia, Deborah Wilson, Gary W. Procop, Fann Wu, Mark J. Fiandaca
  • Mycology
    Fungal Infection in Patients with Serpiginous Choroiditis or Acute Zonal Occult Outer Retinopathy
    Diana Pisa, Marta Ramos, Patricia García, Remberto Escoto, Rafael Barraquer, Susana Molina, Luis Carrasco
  • Mycology
    In Vitro Susceptibility of Invasive Isolates of Candida spp. to Anidulafungin, Caspofungin, and Micafungin: Six Years of Global Surveillance
    M. A. Pfaller, L. Boyken, R. J. Hollis, J. Kroeger, S. A. Messer, S. Tendolkar, D. J. Diekema
  • Mycology
    Growth and Pigment Production on d-Tryptophan Medium by Cryptococcus gattii, Cryptococcus neoformans, and Candida albicans
    Stuart Chaskes, Susana Frases, Michael Cammer, Gary Gerfen, Arturo Casadevall
  • Mycology
    Lodderomyces elongisporus Masquerading as Candida parapsilosis as a Cause of Bloodstream Infections
    Shawn R. Lockhart, Shawn A. Messer, Michael A. Pfaller, Daniel J. Diekema

Mycobacteriology and Aerobic Actinomycetes

  • Mycobacteriology and Aerobic Actinomycetes
    Primary Culture of Mycobacterium ulcerans from Human Tissue Specimens after Storage in Semisolid Transport Medium
    Miriam Eddyani, Martine Debacker, Anandi Martin, Julia Aguiar, Christian R. Johnson, Cécile Uwizeye, Krista Fissette, Françoise Portaels
  • Mycobacteriology and Aerobic Actinomycetes
    Influence of Type of Culture Medium on Characterization of Mycobacterium avium subsp. paratuberculosis Subtypes
    N. Cernicchiaro, S. J. Wells, H. Janagama, S. Sreevatsan
  • Mycobacteriology and Aerobic Actinomycetes
    Specimen Dilution Improves Sensitivity of the Amplified Mycobacterium tuberculosis Direct Test for Smear Microscopy-Positive Respiratory Specimens
    Renata L. Guerra, James F. Baker, Roya Alborz, Derek T. Armstrong, Julia A. Kiehlbauch, Marcus B. Conde, Susan E. Dorman, Nancy M. Hooper

Parasitology

  • Parasitology
    Comparison between Quantitative Nucleic Acid Sequence-Based Amplification, Real-Time Reverse Transcriptase PCR, and Real-Time PCR for Quantification of Leishmania Parasites
    Wendy van der Meide, Jorge Guerra, Gerard Schoone, Marit Farenhorst, Leíla Coelho, William Faber, Inge Peekel, Henk Schallig
  • Parasitology
    Up-Converting Phosphor Technology-Based Lateral Flow Assay for Detection of Schistosoma Circulating Anodic Antigen in Serum
    Paul L. A. M. Corstjens, Lisette van Lieshout, Michel Zuiderwijk, Dieuwke Kornelis, Hans J. Tanke, Andre M. Deelder, Govert J. van Dam
  • Parasitology
    Nested PCR for Specific Diagnosis of Taenia solium Taeniasis
    Holger Mayta, Robert H. Gilman, Emily Prendergast, Janeth P. Castillo, Yeny O. Tinoco, Hector H. Garcia, Armando E. Gonzalez, Charles R. Sterling
    and for the Cysticercosis Working Group in Peru
  • Parasitology
    Granulomatous Amoebic Encephalitis Caused by Acanthamoeba Amoebae of Genotype T2 in a Human Immunodeficiency Virus-Negative Patient
    Julia Walochnik, Alexander Aichelburg, Ojan Assadian, Andrea Steuer, Govinda Visvesvara, Norbert Vetter, Horst Aspöck
  • Parasitology
    Improvement of PCR for Detection of Opisthorchis viverrini DNA in Human Stool Samples
    Kunyarat Duenngai, Paiboon Sithithaworn, Umesha Kanasinakatte Rudrappa, Karunasagar Iddya, Thewarach Laha, Christen Rune Stensvold, Hanne Strandgaard, Maria Vang Johansen

Epidemiology

  • Epidemiology
    Sequential Outbreaks of Infections by Distinct Acinetobacter baumannii Strains in a Public Teaching Hospital in Houston, Texas
    Samuel A. Shelburne, Kavindra V. Singh, A. Clinton White, Laura Byrne, Alexis Carmer, Celest Austin, Edward Graviss, Charles Stager, Barbara E. Murray, Robert L. Atmar
  • Epidemiology
    Epidemiological, Molecular, and Clinical Features of Enterovirus Respiratory Infections in French Children between 1999 and 2005
    Jérôme Jacques, Hélène Moret, Delphine Minette, Nicolas Lévêque, Nicolas Jovenin, Gaetan Deslée, François Lebargy, Jacques Motte, Laurent Andréoletti
  • Epidemiology
    High Rates of Transmission of and Colonization by Streptococcus pneumoniae and Haemophilus influenzae within a Day Care Center Revealed in a Longitudinal Study
    Raquel Sá-Leão, Sónia Nunes, António Brito-Avô, Carla R. Alves, João A. Carriço, Joana Saldanha, Jonas S. Almeida, Ilda Santos-Sanches, Hermíniade de Lencastre
  • Epidemiology
    Overlapping Population Structures of Nasal Isolates of Staphylococcus aureus from Healthy Dutch and American Individuals
    Damian C. Melles, Fred C. Tenover, Matthew J. Kuehnert, Hanneke Witsenboer, Justine K. Peeters, Henri A. Verbrugh, Alex van Belkum
  • Epidemiology
    Genetic Diversity of Burkholderia pseudomallei Isolates in Australia
    Allen C. Cheng, Linda Ward, Daniel Godoy, Robert Norton, Mark Mayo, Daniel Gal, Brian G. Spratt, Bart J. Currie
  • Epidemiology
    Elucidating Global Epidemiology of Burkholderia multivorans in Cases of Cystic Fibrosis by Multilocus Sequence Typing
    Adam Baldwin, Eshwar Mahenthiralingam, Pavel Drevinek, Chris Pope, David J. Waine, Deborah A. Henry, David P. Speert, Phil Carter, Peter Vandamme, John J. LiPuma, Chris G. Dowson
  • Epidemiology
    Optochin Resistance among Streptococcus pneumoniae Strains Colonizing Healthy Children in Portugal
    Sónia Nunes, Raquel Sá-Leão, Hermínia de Lencastre
  • Epidemiology
    Shiga Toxin Gene-Containing Escherichia coli from Cattle and Diarrheic Children in the Pastoral Systems of Southwestern Uganda
    Samuel Majalija, Heidi Segal, Francis Ejobi, B. Gay Elisha

Chlamydiology and Rickettsiology

  • Chlamydiology and Rickettsiology
    Chlamydia trachomatis Serovars among Strains Isolated from Members of Rural Indigenous Communities and Urban Populations in Australia
    Claudiu I. Bandea, Joseph Debattista, Kahaliah Joseph, Joseph Igietseme, Peter Timms, Carolyn M. Black

Case Reports

  • CASE REPORTS
    Lasiodiplodia theobromae Pneumonia in a Liver Transplant Recipient
    Patrick C. Y. Woo, Susanna K. P. Lau, Antonio H. Y. Ngan, Herman Tse, Edward T. K. Tung, Kwok-Yung Yuen
  • CASE REPORTS
    Rapid Diagnosis of Human Brucellosis by Quantitative Real-Time PCR: a Case Report of Brucellar Spondylitis
    Amalia Navarro-Martínez, Elena Navarro, Maria Jesús Castaño, Javier Solera
  • CASE REPORTS
    Candida nivariensis Isolated from an Indonesian Human Immunodeficiency Virus-Infected Patient Suffering from Oropharyngeal Candidiasis
    Retno Wahyuningsih, Ivo N. SahBandar, Bart Theelen, Ferry Hagen, Gé Poot, Jacques F. Meis, Anna Rozalyani, Ridhawati Sjam, Djoko Widodo, Samsuridjal Djauzi, Teun Boekhout

Letters To The Editor

  • LETTERS TO THE EDITOR
    Mortality from an Uncommon Serotype of Streptococcus pneumoniae with an Unusual Presentation
    Henry J. Carson, Robert F. Weis
  • LETTERS TO THE EDITOR
    Genotype MTBDRplus: a Further Step toward Rapid Identification of Drug-Resistant Mycobacterium tuberculosis
    Paolo Miotto, Federica Piana, Daniela Maria Cirillo, Giovanni Battista Migliori
  • LETTERS TO THE EDITOR
    Rapid Identification of Staphyloccocus aureus in Positive-Testing Blood Cultures by Slidex Staph Plus Agglutination Test
    J. J. Kerremans, W. H. F. Goessens, H. A. Verbrugh, M. C. Vos
  • LETTERS TO THE EDITOR
    Evaluation of Melting Curve Analysis for Screening the Most Prevalent Mutations in Topoisomerase Genes from Streptococcus pneumoniae
    Roberto G. Melano, Rachel Higgins, Christine Seah, Steven J. Drews

Author's Correction

  • Author's Correction
    Outbreak of Gastroenteritis Due to Sapovirus
    Grant S. Hansman, Hiroyuki Saito, Chihiro Shibata, Shizuko Ishizuka, Mitsuaki Oseto, Tomoichiro Oka, Naokazu Takeda
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volume 46, issue 1
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