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Bacteriology

Use of a New Single Multiplex PCR-Based Assay for Direct Simultaneous Characterization of Six Neisseria meningitidis Serogroups

Christophe Fraisier, Richard Stor, Bernard Tenebray, Yannick Sanson, Pierre Nicolas
Christophe Fraisier
Unité du Méningocoque, WHO Collaborating Centre, IRBA, Institut de Médecine Tropicale du Service de Santé des Armées, Allée du Médecin Colonel Eugène Jamot, Parc du Pharo, BP 60109, 13262 Marseille Cedex 07, France
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Richard Stor
Unité du Méningocoque, WHO Collaborating Centre, IRBA, Institut de Médecine Tropicale du Service de Santé des Armées, Allée du Médecin Colonel Eugène Jamot, Parc du Pharo, BP 60109, 13262 Marseille Cedex 07, France
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Bernard Tenebray
Unité du Méningocoque, WHO Collaborating Centre, IRBA, Institut de Médecine Tropicale du Service de Santé des Armées, Allée du Médecin Colonel Eugène Jamot, Parc du Pharo, BP 60109, 13262 Marseille Cedex 07, France
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Yannick Sanson
Unité du Méningocoque, WHO Collaborating Centre, IRBA, Institut de Médecine Tropicale du Service de Santé des Armées, Allée du Médecin Colonel Eugène Jamot, Parc du Pharo, BP 60109, 13262 Marseille Cedex 07, France
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Pierre Nicolas
Unité du Méningocoque, WHO Collaborating Centre, IRBA, Institut de Médecine Tropicale du Service de Santé des Armées, Allée du Médecin Colonel Eugène Jamot, Parc du Pharo, BP 60109, 13262 Marseille Cedex 07, France
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  • For correspondence: meningo@imtssa.fr
DOI: 10.1128/JCM.02415-08
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    FIG. 1.

    Multiplex PCR amplification of the siaD/synB and siaD/synE (serogroups B and C), synG and synF (serogroups W135 and Y), orf-2 (serogroup A), and ctrA (serogroup X) genes from samples belonging to serogroup A (lanes 1 to 8), B (lanes 9 to 17), C (lanes 18 to 21) (A) and X (lanes 22 to 31) and W135 (lanes 32 to 43) and Y (lanes 44 to 50) (B). DNA from other species, Haemophilus influenzae (lanes 51, 52, 54, 55, 57) and Streptococcus pneumoniae (lanes 53, 56, 58, 59, and 60), were used as negative controls. PCR products were separated on a 4% agarose gel. Molecular sizes are indicated.

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  • TABLE 1.

    Oligonucleotides used in this study

    OligonucleotideSequence (5′-3′)Gene amplified (serogroup)Amplicon length (bp)Source or reference
    98-28GCAATAGGTGTATATATTCTTCC orf-2 (A)400 14
    98-29CGTAATAGTTTCGTATGCCTTCTT orf-2 (A)400 14
    98-19GGATCATTTCAGTGTTTTCCACCA synB (B)450 14
    98-20GCATGCTGGAGGAATAAGCATTAA synB (B)450 14
    98-17TCAAATGAGTTTGCGAATAGAAGGT synE (C)250 14
    98-18CAATCACGATTTGCCCAATTGAC synE (C)250 14
    98-32CAGAAAGTGAGGGATTTCCATA synG (W135)120 14
    98-33CACAACCATTTTCATTATAGTTACTGT synG (W135)120 14
    98-36ACGATATCCCTATCCTTGCCTA synF (Y)75This study
    98-35CTGAAGCGTTTTCATTATAATTGCTAA synF (Y)75 14
    XFAATGCAAATTCAATTGGTTG ctrA (X)190This study
    XRCTTGGGCCTTATACAAAGAC ctrA (X)190This study
  • TABLE 2.

    Samples tested in this study and PCR resultsd

    SampleSerogroupaSample sourceCulturebCountry of originSequence typeMultiplex PCRc
    2008-183PACarriageYesNigerNDA
    2008-185ACSFYesBurkina Faso2859A
    2008-196ACSFYesBurkina Faso2859A
    2008-197ACSFYesBurkina Faso2859A
    2008-225ACSFYesBurkina Faso2859A
    2008-226ACSFYesBurkina Faso2859A
    2008-227ACSFYesBurkina Faso2859A
    2007-155ACSFNoNiger7A
    2007-158ACSFNoNiger7A
    VN73BCSFYesVietnamNDB
    2008-048BCSFYesVietnam6985B
    2008-049BCSFYesVietnam6985B
    2008-308BCSF + bloodYesFrance33B
    2008-309BNAYesVietnam1576B
    2008-315BBloodYesFrance162B
    2007-053BCSFYesFrance269B
    2007-055BCSFYesFrance1403B
    2008-219CCSFYesFrance6969C
    2007-047CCSF + bloodYesFrance11C
    2007-054CBloodYesFrance6347C
    2004-178CCSFYesFrance3747C
    2008-223XCSFYesBurkina Faso181X
    2008-267XCSFNoTogo181X
    2008-269XCSFNoTogo181X
    2008-270XCSFNoTogo181X
    2008-271XCSFNoTogo181X
    2007-114XCSFNoNiger181X
    2007-151XCSFNoNiger5789X
    2007-340XCSFYesBurkina Faso181X
    2006-078XCSFYesNiger181X
    2006-087XCSFYesNiger5789X
    2008-109W135CSFYesBenin2881W135
    2008-218W135CSFYesBurkina Faso2881W135
    2008-278W135CSFNoTogoNDW135
    2008-279W135CSFNoTogoNDW135
    2008-280W135CSFNoTogoNDW135
    2007-105W135CSFNoChad11W135
    2007-107W135CSFYesBenin2881W135
    2007-127W135CSFNoNiger2881W135
    2007-166W135CSFYesChad2881W135
    2007-448W135CSFYesTogo2881W135
    2007-449W135CSFYesTogo2881W135
    2007-457W135CSFYesTogo2881W135
    2004-266W135CSFYesBurkina FasoNDW135
    2008-235YCSFYesBurkina Faso4375Y
    2007-111YBloodYesFrance4171Y
    2007-188YCSFYesBurkina Faso2880Y
    2007-443PAExpectorationYesFrance167Y
    2006-092YCSFYesNiger4375Y
    2004-035YCSFYesBenin767Y
    2004-263YCSFYesBurkina FasoNDY
    • ↵ a Serogroup determined by agglutination tests or previous PCR analysis.

    • ↵ b DNA extracted with (yes) or without (no) culture.

    • ↵ c Serogroup determined by multiplex PCR (this study).

    • ↵ d PA, polyagglutination; NA, not available; ND, not determined.

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Use of a New Single Multiplex PCR-Based Assay for Direct Simultaneous Characterization of Six Neisseria meningitidis Serogroups
Christophe Fraisier, Richard Stor, Bernard Tenebray, Yannick Sanson, Pierre Nicolas
Journal of Clinical Microbiology Jul 2009, 47 (8) 2662-2666; DOI: 10.1128/JCM.02415-08

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Use of a New Single Multiplex PCR-Based Assay for Direct Simultaneous Characterization of Six Neisseria meningitidis Serogroups
Christophe Fraisier, Richard Stor, Bernard Tenebray, Yannick Sanson, Pierre Nicolas
Journal of Clinical Microbiology Jul 2009, 47 (8) 2662-2666; DOI: 10.1128/JCM.02415-08
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KEYWORDS

Meningitis, Meningococcal
Neisseria meningitidis
polymerase chain reaction

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