Skip to main content
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems
  • Log in
  • My alerts
  • My Cart

Main menu

  • Home
  • Articles
    • Current Issue
    • Accepted Manuscripts
    • COVID-19 Special Collection
    • Archive
    • Minireviews
  • For Authors
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About JCM
    • Editor in Chief
    • Editorial Board
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • Subscribe
    • Members
    • Institutions
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems

User menu

  • Log in
  • My alerts
  • My Cart

Search

  • Advanced search
Journal of Clinical Microbiology
publisher-logosite-logo

Advanced Search

  • Home
  • Articles
    • Current Issue
    • Accepted Manuscripts
    • COVID-19 Special Collection
    • Archive
    • Minireviews
  • For Authors
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About JCM
    • Editor in Chief
    • Editorial Board
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • Subscribe
    • Members
    • Institutions

Table of Contents

April 1, 2015; Volume 53,Issue 4

Photo Quiz

  • Photo Quiz
    Photo Quiz: Diarrhea and Fever in a Child Returning from Africa
    Ryan F. Relich, John J. Manaloor, Thomas G. Fox
  • Photo Quiz
    Answer to April 2015 Photo Quiz
    Ryan F. Relich, John J. Manaloor, Thomas G. Fox

Commentaries

  • Free
    Other
    Commentaries: Integration of Whole-Genome Sequencing into Infection Control Practices: the Potential and the Hurdles
    Elizabeth Robilotti, Mini Kamboj
  • Other
    Commentaries: Name Changes in Medically Important Fungi and Their Implications for Clinical Practice
    G. Sybren de Hoog, Vishnu Chaturvedi, David W. Denning, Paul S. Dyer, Jens Christian Frisvad, David Geiser, Yvonne Gräser, Josep Guarro, Gerhard Haase, Kyung-Joo Kwon-Chung, Jacques F. Meis, Wieland Meyer, John I. Pitt, Robert A. Samson, John W. Taylor, Kathrin Tintelnot, Roxana G. Vitale, Thomas J. Walsh, Michaela Lackner
    and the ISHAM Working Group on Nomenclature of Medical Fungi

Bacteriology

  • Free
    Bacteriology
    Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology
    Stephen J. Salipante, Dhruba J. SenGupta, Lisa A. Cummings, Tyler A. Land, Daniel R. Hoogestraat, Brad T. Cookson
  • Bacteriology
    Tracing Melioidosis Back to the Source: Using Whole-Genome Sequencing To Investigate an Outbreak Originating from a Contaminated Domestic Water Supply
    Evan McRobb, Derek S. Sarovich, Erin P. Price, Mirjam Kaestli, Mark Mayo, Paul Keim, Bart J. Currie
  • Bacteriology
    Multiplex Touchdown PCR for Rapid Typing of the Opportunistic Pathogen Propionibacterium acnes
    Emma Barnard, István Nagy, Judit Hunyadkürti, Sheila Patrick, Andrew McDowell
  • Open Access
    Bacteriology
    Emergence of an Outbreak-Associated Clostridium difficile Variant with Increased Virulence
    Carlos Quesada-Gómez, Diana López-Ureña, Luis Acuña-Amador, Manuel Villalobos-Zúñiga, Tim Du, Rosemayre Freire, Caterina Guzmán-Verri, María del Mar Gamboa-Coronado, Trevor D. Lawley, Edgardo Moreno, Michael R. Mulvey, Gerly Anne de Castro Brito, Evelyn Rodríguez-Cavallini, César Rodríguez, Esteban Chaves-Olarte
  • Bacteriology
    Diagnostic Accuracy of Presepsin (sCD14-ST) for Prediction of Bacterial Infection in Cerebrospinal Fluid Samples from Children with Suspected Bacterial Meningitis or Ventriculitis
    David Stubljar, Andreja Natasa Kopitar, Mojca Groselj-Grenc, Kristina Suhadolc, Teja Fabjan, Miha Skvarc
  • Bacteriology
    Evaluation of a New Phenotypic OXA-48 Disk Test for Differentiation of OXA-48 Carbapenemase-Producing Enterobacteriaceae Clinical Isolates
    Athanassios Tsakris, Aggeliki Poulou, Pierre Bogaerts, Evangelia Dimitroulia, Spyros Pournaras, Youri Glupczynski
  • Bacteriology
    Lack of Clinical Utility of Urine Gram Stain for Suspected Urinary Tract Infection in Pediatric Patients
    Joseph B. Cantey, Claudia Gaviria-Agudelo, Erin McElvania TeKippe, Christopher D. Doern
  • Bacteriology
    Global Assessment of Antimicrobial Susceptibility among Gram-Negative Organisms Collected from Pediatric Patients between 2004 and 2012: Results from the Tigecycline Evaluation and Surveillance Trial
    Sue C. Kehl, Michael J. Dowzicky
  • Bacteriology
    Impact of Intermittent Preventive Treatment in Pregnancy with Azithromycin-Containing Regimens on Maternal Nasopharyngeal Carriage and Antibiotic Sensitivity of Streptococcus pneumoniae, Haemophilus influenzae, and Staphylococcus aureus: a Cross-Sectional Survey at Delivery
    Holger W. Unger, Celestine Aho, Maria Ome-Kaius, Regina A. Wangnapi, Alexandra J. Umbers, Wanda Jack, Alice Lafana, Audrey Michael, Sarah Hanieh, Peter Siba, Ivo Mueller, Andrew R. Greenhill, Stephen J. Rogerson
  • Bacteriology
    Use of the Optum Labs Data Warehouse To Assess Test Ordering Patterns for Diagnosis of Helicobacter pylori Infection in the United States
    Elitza S. Theel, Ryan D. Johnson, Elizabeth Plumhoff, Curtis A. Hanson
  • Bacteriology
    Evaluation of the Boson Chemiluminescence Immunoassay as a First-Line Screening Test in the ECDC Algorithm for Syphilis Serodiagnosis in a Population with a High Prevalence of Syphilis
    Xin-Hui Qiu, Ya-Feng Zhang, Yu-Yan Chen, Qiao Zhang, Fu-Yi Chen, Long Liu, Jin-Yi Fan, Kun Gao, Xiao-Zhen Zhu, Wei-Hong Zheng, Hui-Lin Zhang, Li-Rong Lin, Li-Li Liu, Man-Li Tong, Chang-Gong Zhang, Jian-Jun Niu, Tian-Ci Yang
  • Bacteriology
    Microbiological and Clinical Features of Four Cases of Catheter-Related Infection by Methylobacterium radiotolerans
    Li Li, Jeffrey J. Tarrand, Xiang Y. Han
  • Bacteriology
    Association of Tellurite Resistance with Hypervirulent Clonal Groups of Klebsiella pneumoniae
    Virginie Passet, Sylvain Brisse
  • Bacteriology
    Fusobacterium nucleatum Subspecies Identification by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry
    Shuping Nie, Baoyu Tian, Xiaowei Wang, David H. Pincus, Martin Welker, Kathleen Gilhuley, Xuedong Lu, Yiping W. Han, Yi-Wei Tang
  • Bacteriology
    Impact of a Rapid Microarray-Based Assay for Identification of Positive Blood Cultures for Treatment Optimization for Patients with Streptococcal and Enterococcal Bacteremia
    Danya G. Roshdy, Anthony Tran, Nicholas LeCroy, Donglin Zeng, Fang-shu Ou, Lindsay M. Daniels, David J. Weber, Kevin Alby, Melissa B. Miller

Mycobacteriology and Aerobic Actinomycetes

  • Mycobacteriology and Aerobic Actinomycetes
    Sputum Volume Predicts Sputum Mycobacterial Load during the First 2 Weeks of Antituberculosis Treatment
    Miriam N. Karinja, Tonya M. Esterhuizen, Sven O. Friedrich, Andreas H. Diacon
  • Mycobacteriology and Aerobic Actinomycetes
    Evaluation of a Low-Density Hydrogel Microarray Technique for Mycobacterial Species Identification
    Danila V. Zimenkov, Elena V. Kulagina, Olga V. Antonova, Maria A. Krasnova, Ekaterina N. Chernyaeva, Vyacheslav Y. Zhuravlev, Alexey V. Kuz'min, Sergey A. Popov, Alexander S. Zasedatelev, Dmitry A. Gryadunov
  • Open Access
    Mycobacteriology and Aerobic Actinomycetes
    Mycobacterial DNA Extraction for Whole-Genome Sequencing from Early Positive Liquid (MGIT) Cultures
    Antonina A. Votintseva, Louise J. Pankhurst, Luke W. Anson, Marcus R. Morgan, Deborah Gascoyne-Binzi, Timothy M. Walker, T. Phuong Quan, David H. Wyllie, Carlos Del Ojo Elias, Mark Wilcox, A. Sarah Walker, Tim E. A. Peto, Derrick W. Crook
  • Mycobacteriology and Aerobic Actinomycetes
    Utility of Sequencing the erm(41) Gene in Isolates of Mycobacterium abscessus subsp. abscessus with Low and Intermediate Clarithromycin MICs
    Barbara A. Brown-Elliott, Sruthi Vasireddy, Ravikiran Vasireddy, Elena Iakhiaeva, Susan T. Howard, Kevin Nash, Nicholas Parodi, Anita Strong, Martha Gee, Terry Smith, Richard J. Wallace
  • Mycobacteriology and Aerobic Actinomycetes
    Improving the Sensitivity of the Xpert MTB/RIF Assay on Sputum Pellets by Decreasing the Amount of Added Sample Reagent: a Laboratory and Clinical Evaluation
    Nila J. Dharan, Danielle Amisano, Gerald Mboowa, Willy Ssengooba, Robert Blakemore, Rachel W. Kubiak, Derek T. Armstrong, Martin Jones, Yukari C. Manabe, Moses L. Joloba, Jerrold J. Ellner, Susan E. Dorman, David Alland
  • Open Access
    Mycobacteriology and Aerobic Actinomycetes
    Mycobacterium tuberculosis Lineage 7 Strains Are Associated with Prolonged Patient Delay in Seeking Treatment for Pulmonary Tuberculosis in Amhara Region, Ethiopia
    Solomon A. Yimer, Gunnstein Norheim, Amine Namouchi, Ephrem D. Zegeye, Wibeke Kinander, Tone Tønjum, Shiferaw Bekele, Turid Mannsåker, Gunnar Bjune, Abraham Aseffa, Carol Holm-Hansen
  • Mycobacteriology and Aerobic Actinomycetes
    Detection of Mycobacterium tuberculosis by EasyNAT Diagnostic Kit in Sputum Samples from Tanzania
    Francis A. Mhimbira, Maira Bholla, Mohamed Sasamalo, William Mukurasi, Jerry J. Hella, Levan Jugheli, Klaus Reither
  • Mycobacteriology and Aerobic Actinomycetes
    Discordance between Xpert MTB/RIF Assay and Bactec MGIT 960 Culture System for Detection of Rifampin-Resistant Mycobacterium tuberculosis Isolates in a Country with a Low Tuberculosis (TB) Incidence
    Eiman Mokaddas, Suhail Ahmad, Hanaa S. Eldeen, Noura Al-Mutairi
  • Mycobacteriology and Aerobic Actinomycetes
    A Pilot Evaluation of External Quality Assessment of GenoType MTBDRplus Versions 1 and 2 Using Dried Culture Spot Material
    N. Gous, L. E. Isherwood, A. David, W. Stevens, L. E. Scott
  • Mycobacteriology and Aerobic Actinomycetes
    Comparison of MGIT and Myco/F Lytic Liquid-Based Blood Culture Systems for Recovery of Mycobacterium tuberculosis from Pleural Fluid
    Elizabeth Harausz, John Kafuluma Lusiba, Mary Nsereko, John L. Johnson, Zahra Toossi, Sam Ogwang, W. Henry Boom, Moses L. Joloba
    and for the Tuberculosis Research Unit (TBRU)
  • Mycobacteriology and Aerobic Actinomycetes
    Development of a Peptide Nucleic Acid-Based Multiprobe Real-Time PCR Method Targeting the hsp65 Gene for Differentiation among Mycobacterium abscessus Strains
    Kijeong Kim, Byoung-Jun Kim, Tae Sun Shim, Seok-Hyun Hong, Yoon-Hoh Kook, Bum-Joon Kim

Mycology

  • Mycology
    Reevaluation of Commercial Reagents for Detection of Histoplasma capsulatum Antigen in Urine
    Elitza S. Theel, Julie A. Harring, Ala S. Dababneh, Leonard O. Rollins, Jeannie E. Bestrom, Deborah J. Jespersen
  • Mycology
    Cellular Profiles of Bronchoalveolar Lavage Fluid and Their Prognostic Significance for Non-HIV-Infected Patients with Pneumocystis jirovecii Pneumonia
    Ju Young Lee, Hyun Jung Park, Yong Kyun Kim, Shinae Yu, Yong Pil Chong, Sung-Han Kim, Heungsup Sung, Sang-Oh Lee, Mi-Na Kim, Chae-Man Lim, Yang Soo Kim, Younsuck Koh, Jun Hee Woo, Sang-Ho Choi
  • Mycology
    Candida Colonization as a Risk Marker for Invasive Candidiasis in Mixed Medical-Surgical Intensive Care Units: Development and Evaluation of a Simple, Standard Protocol
    Anna F. Lau, Masrura Kabir, Sharon C.-A. Chen, E. Geoffrey Playford, Deborah J. Marriott, Michael Jones, Jeffrey Lipman, Emma McBryde, Thomas Gottlieb, Winston Cheung, Ian Seppelt, Jonathan Iredell, Tania C. Sorrell
  • Mycology
    Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry for Differentiation of the Dimorphic Fungal Species Paracoccidioides brasiliensis and Paracoccidioides lutzii
    João Nobrega de Almeida, Gilda M. B. Del Negro, Rafaella C. Grenfell, Monica S. M. Vidal, Danilo Y. Thomaz, Dulce S. Y. de Figueiredo, Eduardo Bagagli, Luiz Juliano, Gil Benard

Parasitology

  • Parasitology
    A 10-Year Retrospective Comparison of Two Target Sequences, REP-529 and B1, for Toxoplasma gondii Detection by Quantitative PCR
    Sorya Belaz, Jean-Pierre Gangneux, Peggy Dupretz, Claude Guiguen, Florence Robert-Gangneux
  • Parasitology
    Improving Leishmania Species Identification in Different Types of Samples from Cutaneous Lesions
    Mónica L. Cruz-Barrera, Clemencia Ovalle-Bracho, Viviana Ortegon-Vergara, Jairo E. Pérez-Franco, Maria C. Echeverry
  • Parasitology
    Human Diphyllobothrium nihonkaiense Infection in Washington State
    Ferric C. Fang, Zachary P. Billman, Carolyn K. Wallis, April N. Abbott, John C. Olson, Shireesha Dhanireddy, Sean C. Murphy
  • Free
    Parasitology
    Evaluation of Ebola Virus Inactivation Procedures for Plasmodium falciparum Malaria Diagnostics
    Rachel Lau, Amanda Wang, Ann Chong-Kit, Filip Ralevski, Andrea K. Boggild

Virology

  • Virology
    Leukodepletion as a Point-of-Care Method for Monitoring HIV-1 Viral Load in Whole Blood
    Logan Titchmarsh, Clement Zeh, Thierry Verpoort, Jean-Pierre Allain, Helen Lee
  • Virology
    Monitoring the Quality of HIV-1 Viral Load Testing through a Proficiency Testing Program Using Dried Tube Specimens in Resource-Limited Settings
    Shon Nguyen, Artur Ramos, Joy Chang, Bin Li, Vedapuri Shanmugam, Debrah Boeras, John N. Nkengasong, Chunfu Yang, Dennis Ellenberger
  • Virology
    Validation of Rapid Point-of-Care (POC) Tests for Detection of Hepatitis B Surface Antigen in Field and Laboratory Settings in the Gambia, Western Africa
    Harr Freeya Njai, Yusuke Shimakawa, Bakary Sanneh, Lynne Ferguson, Gibril Ndow, Maimuna Mendy, Amina Sow, Gora Lo, Coumba Toure-Kane, Junko Tanaka, Makie Taal, Umberto D'alessandro, Ramou Njie, Mark Thursz, Maud Lemoine
  • Virology
    Protein-Peptide Arrays for Detection of Specific Anti-Hepatitis D Virus (HDV) Genotype 1, 6, and 8 Antibodies among HDV-Infected Patients by Surface Plasmon Resonance Imaging
    Marie-Bernadette Villiers, Jean-Claude Cortay, Sandra Cortès, Bénédicte Bloquel, Ségolène Brichler, Carine Brakha, Alan Kay, Nisrine Falah, Fabien Zoulim, Christophe Marquette, Patrice N. Marche, Paul Dény
  • Virology
    Clinical Relevance of Multiple Respiratory Virus Detection in Adult Patients with Acute Respiratory Illness
    Seong-Ho Choi, Jin-Won Chung, Hye Ryoun Kim
  • Virology
    Monitoring of Cytomegalovirus Viral Loads by Two Molecular Assays in Whole-Blood and Plasma Samples from Hematopoietic Stem Cell Transplant Recipients
    N. Esther Babady, Cindy Cheng, Evelyn Cumberbatch, Jeffrey Stiles, Genovefa Papanicolaou, Yi-Wei Tang
  • Virology
    An OPTIMIZE Study Retrospective Analysis for Management of Telaprevir-Treated Hepatitis C Virus (HCV)-Infected Patients by Use of the Abbott RealTime HCV RNA Assay
    Christoph Sarrazin, Inge Dierynck, Gavin Cloherty, Anne Ghys, Katrien Janssen, Donghan Luo, James Witek, Maria Buti, Gaston Picchio, Sandra De Meyer
  • Virology
    Development of a Novel Liquid Bead Array Human Papillomavirus Genotyping Assay (PGMY-LX) and Comparison with Linear Array for Continuity in Longitudinal Cohort Studies
    Sepideh Farhat, Mark E. Scott, Yifei Ma, Anna-Barbara Moscicki
  • Open Access
    Virology
    Comparison of Human Papillomavirus Detection by Aptima HPV and cobas HPV Tests in a Population of Women Referred for Colposcopy following Detection of Atypical Squamous Cells of Undetermined Significance by Pap Cytology
    Philip E. Castle, Barbara Eaton, Jennifer Reid, Damon Getman, Janel Dockter
  • Virology
    Comparison of the Sofia and Veritor Direct Antigen Detection Assay Systems for Identification of Influenza Viruses from Patient Nasopharyngeal Specimens
    G. P. Leonardi, A. M. Wilson, I. Mitrache, A. R. Zuretti
  • Free
    Virology
    Multiplex Nucleic Acid Suspension Bead Arrays for Detection and Subtyping of Filoviruses
    Cecilia Bergqvist, Petra Holmström, Gunnel Lindegren, Nina Lagerqvist, Mikael Leijon, Kerstin I. Falk
  • Open Access
    Virology
    Variola Virus-Specific Diagnostic Assays: Characterization, Sensitivity, and Specificity
    Ashley V. Kondas, Victoria A. Olson, Yu Li, Jason Abel, Miriam Laker, Laura Rose, Kimberly Wilkins, Jonathan Turner, Richard Kline, Inger K. Damon

Immunoassays

  • Immunoassays
    Multicountry Prospective Clinical Evaluation of Two Enzyme-Linked Immunosorbent Assays and Two Rapid Diagnostic Tests for Diagnosing Dengue Fever
    Subhamoy Pal, Allison L. Dauner, Andrea Valks, Brett M. Forshey, Kanya C. Long, Butsaya Thaisomboonsuk, Gloria Sierra, Victor Picos, Sara Talmage, Amy C. Morrison, Eric S. Halsey, Guillermo Comach, Chadwick Yasuda, Michael Loeffelholz, Richard G. Jarman, Stefan Fernandez, Ung Sam An, Tadeusz J. Kochel, Louis E. Jasper, Shuenn-Jue L. Wu
  • Immunoassays
    Improved Serodiagnosis of Bovine Brucellosis by Novel Synthetic Oligosaccharide Antigens Representing the Capping M Epitope Elements of Brucella O-Polysaccharide
    John McGiven, Laurence Howells, Lucy Duncombe, Judy Stack, N. Vijaya Ganesh, Julie Guiard, David R. Bundle
  • Immunoassays
    Clinical Evaluation of the OneStep Gonorrhea RapiCard InstaTest for Detection of Neisseria gonorrhoeae in Symptomatic Patients from KwaZulu-Natal, South Africa
    N. S. Abbai, P. Moodley, T. Reddy, T. G. Zondi, S. Rambaran, K. Naidoo, G. Ramjee
  • Immunoassays
    Evaluation of the Vitros Syphilis TPA Chemiluminescence Immunoassay as a First-Line Method for Reverse Syphilis Screening
    Victoria González, Gema Fernández, Eva Dopico, Nuria Margall, Juliana Esperalba, Carme Muñoz, Elisabeth Castro, Elena Sulleiro, Lurdes Matas

Clinical Veterinary Microbiology

  • Clinical Veterinary Microbiology
    Detection and Discrimination of Classical and Atypical L-Type Bovine Spongiform Encephalopathy by Real-Time Quaking-Induced Conversion
    Christina D. Orrú, Alessandra Favole, Cristiano Corona, Maria Mazza, Matteo Manca, Bradley R. Groveman, Andrew G. Hughson, Pier Luigi Acutis, Maria Caramelli, Gianluigi Zanusso, Cristina Casalone, Byron Caughey
  • Clinical Veterinary Microbiology
    Efficient, Validated Method for Detection of Mycobacterial Growth in Liquid Culture Media by Use of Bead Beating, Magnetic-Particle-Based Nucleic Acid Isolation, and Quantitative PCR
    Karren M. Plain, Anna M. Waldron, Douglas J. Begg, Kumudika de Silva, Auriol C. Purdie, Richard J. Whittington
  • Clinical Veterinary Microbiology
    Development and Validation of a Rapid Immunochromatographic Assay for Detection of Middle East Respiratory Syndrome Coronavirus Antigen in Dromedary Camels
    Daesub Song, Gunwoo Ha, Wissam Serhan, Yassir Eltahir, Mohammed Yusof, Farouq Hashem, Elsaeid Elsayed, Bahaaeldin Marzoug, Assem Abdelazim, Salama Al Muhairi
  • Clinical Veterinary Microbiology
    Efficient Isolation of Swine Influenza Viruses by Age-Targeted Specimen Collection
    Makoto Ozawa, Aya Matsuu, Kouki Yonezawa, Manabu Igarashi, Kosuke Okuya, Toshiko Kawabata, Kimihito Ito, Kyoko Tsukiyama-Kohara, Akira Taneno, Eisaburo Deguchi

Epidemiology

  • Free
    Epidemiology
    Delineating Community Outbreaks of Salmonella enterica Serovar Typhimurium by Use of Whole-Genome Sequencing: Insights into Genomic Variability within an Outbreak
    Sophie Octavia, Qinning Wang, Mark M. Tanaka, Sandeep Kaur, Vitali Sintchenko, Ruiting Lan
  • Epidemiology
    Endotoxemia as a Diagnostic Tool for Patients with Suspected Bacteremia Caused by Gram-Negative Organisms: a Meta-Analysis of 4 Decades of Studies
    James C. Hurley, Piotr Nowak, Lars Öhrmalm, Charalambos Gogos, Apostolos Armaganidis, Evangelos J. Giamarellos-Bourboulis
  • Open Access
    Epidemiology
    Evaluation of Portability and Cost of a Fluorescent PCR Ribotyping Protocol for Clostridium difficile Epidemiology
    Jonathan N. V. Martinson, Susan Broadaway, Egan Lohman, Christina Johnson, M. Jahangir Alam, Mohammed Khaleduzzaman, Kevin W. Garey, Jessica Schlackman, Vincent B. Young, Kavitha Santhosh, Krishna Rao, Robert H. Lyons, Seth T. Walk
  • Epidemiology
    Differential Single Nucleotide Polymorphism-Based Analysis of an Outbreak Caused by Salmonella enterica Serovar Manhattan Reveals Epidemiological Details Missed by Standard Pulsed-Field Gel Electrophoresis
    Erika Scaltriti, Davide Sassera, Francesco Comandatore, Marina Morganti, Carmen Mandalari, Stefano Gaiarsa, Claudio Bandi, Gianguglielmo Zehender, Luca Bolzoni, Gabriele Casadei, Stefano Pongolini
  • Epidemiology
    Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Identifies Pseudomonas aeruginosa High-Risk Clones
    Nadège Cabrolier, Marlène Sauget, Xavier Bertrand, Didier Hocquet

Case Reports

  • CASE REPORTS
    Detection of a Transient R292K Mutation in Influenza A/H3N2 Viruses Shed for Several Weeks by an Immunocompromised Patient
    N. Esther Babady, Jennifer M. Laplante, Yi-Wei Tang, Kirsten St. George
  • CASE REPORTS
    Streptococcus gallolyticus subsp. pasteurianus Infection in Twin Infants
    Sannya Vidyadhar Hede, Liset Olarte, Lakshmi Chandramohan, Sheldon L. Kaplan, Kristina G. Hulten
  • CASE REPORTS
    Foot Infection by Clostridium sordellii: Case Report and Review of 15 Cases in France
    Philippe Bouvet, Jean Sautereau, Alain Le Coustumier, Francine Mory, Christiane Bouchier, Michel-R. Popoff
  • CASE REPORTS
    Ruminococcus gnavus Total Hip Arthroplasty Infection in a 62-Year-Old Man with Ulcerative Colitis
    Anne-Laure Roux, Faten El Sayed, Pascal Duffiet, Thomas Bauer, Beate Heym, Jean-Louis Gaillard, Jean-Louis Herrmann, Martin Rottman
  • Open Access
    CASE REPORTS
    Diagnosing Rhodococcus equi Infections in a Setting Where Tuberculosis Is Highly Endemic: a Double Challenge
    Thuy Le, Shama Cash-Goldwasser, Phan Vinh Tho, Nguyen Phu Huong Lan, James I. Campbell, H. Rogier van Doorn, Nguyen Tien Lam, Nguyen Vu Trung, Dao Tuyet Trinh, Nguyen Van Kinh, Heiman F. L. Wertheim
  • CASE REPORTS
    Reactivation of Hepatitis B Virus without Core Antibody
    André Silva-Pinto, Joaquim Andrade, Fernando Araújo, Lurdes Santos, António Sarmento
  • CASE REPORTS
    Recurrence of Disseminated Mycobacterium avium Complex Disease in a Patient with Anti-Gamma Interferon Autoantibodies by Reinfection
    Tomoyasu Nishimura, Yukiko Fujita-Suzuki, Makoto Yonemaru, Kiyofumi Ohkusu, Takuro Sakagami, Stephen M. Carpenter, Yoshihito Otsuka, Ho Namkoong, Ikuya Yano, Naoki Hasegawa
  • CASE REPORTS
    Community-Onset Pyomyositis Caused by a Salmonella enterica Serovar Enteritidis Sequence Type 11 Strain Producing CTX-M-15 Extended-Spectrum β-Lactamase
    Jeong-Hwan Hwang, Gee-Wook Shin, Chang-Seop Lee
  • CASE REPORTS
    First Report of Chronic Pulmonary Infection by KPC-3-Producing and Colistin-Resistant Klebsiella pneumoniae Sequence Type 258 (ST258) in an Adult Patient with Cystic Fibrosis
    Emanuele Delfino, Daniele Roberto Giacobbe, Valerio Del Bono, Erika Coppo, Anna Marchese, Graziana Manno, Patrizia Morelli, Laura Minicucci, Claudio Viscoli
  • CASE REPORTS
    Toscana Virus Encephalitis in a Traveler Returning to the United States
    Benjamin A. Howell, Marwan M. Azar, Marie L. Landry, Albert C. Shaw
  • CASE REPORTS
    Bacteremia Caused by Arcobacter butzleri in an Immunocompromised Host
    Esther Arguello, Caitlin C. Otto, Peter Mead, N. Esther Babady

Letters to the Editor

  • LETTERS TO THE EDITOR
    Frozen Master Mix-Based Modification of Commercial Reverse Transcriptase PCR for Detection of Influenza and Respiratory Syncytial Viruses
    Brooke Wenninger, Erik Munson, Maureen Napierala, Kimber L. Munson, Dorothy Bilbo, Jeanne E. Hryciuk
  • LETTERS TO THE EDITOR
    Shiga Toxin 2a in Escherichia albertii
    Lin Thorstensen Brandal, Hege Smith Tunsjø, Trond Egil Ranheim, Inger Løbersli, Heidi Lange, Astrid Louise Wester
  • LETTERS TO THE EDITOR
    Inactivation of Burkholderia mallei in Equine Serum for Laboratory Use
    Lorraine Perrett, Ian Mawhinney
  • LETTERS TO THE EDITOR
    Passage of Meloidogyne Eggs in Human Stool: Forgotten, but Not Gone
    Richard S. Bradbury, Richard Speare

Author Correction

  • Free
    Author Correction
    Correction for Milillo et al., Rapid and Simultaneous Detection of bla KPC and bla NDM by Use of Multiplex Real-Time PCR
    Michael Milillo, Yoon I. Kwak, Erik Snesrud, Paige E. Waterman, Emil Lesho, Patrick McGann

Masthead

  • Free
    Masthead
    Editorial Board
PreviousNext
Back to top

Journal of Clinical Microbiology: 53 (4)

In This Issue

volume 53, issue 4
  • Table of Contents (PDF)
  • Journal Cover & Description
Sign up for alerts

Jump to

  • Photo Quiz
  • Commentaries
  • Bacteriology
  • Mycobacteriology and Aerobic Actinomycetes
  • Mycology
  • Parasitology
  • Virology
  • Immunoassays
  • Clinical Veterinary Microbiology
  • Epidemiology
  • Case Reports
  • Letters to the Editor
  • Author Correction
  • Masthead
  • Most Read
  • Most Cited
Loading
  • Laboratory Diagnosis of COVID-19: Current Issues and Challenges
  • When To Retest: an Examination of Repeat COVID-19 PCR Patterns in an Ambulatory Population
  • Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
  • Clinical Evaluation of BD Veritor SARS-CoV-2 Point-of-Care Test Performance Compared to PCR-Based Testing and versus the Sofia 2 SARS Antigen Point-of-Care Test
More...

About

  • About JCM
  • Editor in Chief
  • Board of Editors
  • Editor Conflicts of Interest
  • For Reviewers
  • For the Media
  • For Librarians
  • For Advertisers
  • Alerts
  • RSS
  • FAQ
  • Permissions
  • Journal Announcements

Authors

  • ASM Author Center
  • Submit a Manuscript
  • Article Types
  • Resources for Clinical Microbiologists
  • Ethics
  • Contact Us

Follow #JClinMicro

@ASMicrobiology

       

ASM Journals

ASM journals are the most prominent publications in the field, delivering up-to-date and authoritative coverage of both basic and clinical microbiology.

About ASM | Contact Us | Press Room

 

ASM is a member of

Scientific Society Publisher Alliance

 

American Society for Microbiology
1752 N St. NW
Washington, DC 20036
Phone: (202) 737-3600

 

Copyright © 2021 American Society for Microbiology | Privacy Policy | Website feedback

Print ISSN: 0095-1137; Online ISSN: 1098-660X