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Bacteriology

Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach

Jie Liu, Mathieu Almeida, Furqan Kabir, Sadia Shakoor, Shahida Qureshi, Anita Zaidi, Shan Li, Boubou Tamboura, Samba O. Sow, Inacio Mandomando, Pedro L. Alonso, Thandavarayan Ramamurthy, Dipika Sur, Karen Kotloff, James Nataro, Myron M. Levine, O. Colin Stine, Eric Houpt
Andrew B. Onderdonk, Editor
Jie Liu
aDivision of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, USA
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Mathieu Almeida
bCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA
dSchool of Medicine, University of Maryland, Baltimore, Maryland, USA
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Furqan Kabir
cAga Khan University, Karachi, Pakistan
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Sadia Shakoor
cAga Khan University, Karachi, Pakistan
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Shahida Qureshi
cAga Khan University, Karachi, Pakistan
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Anita Zaidi
cAga Khan University, Karachi, Pakistan
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Shan Li
dSchool of Medicine, University of Maryland, Baltimore, Maryland, USA
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Boubou Tamboura
eCentre pour le Développement des Vaccins, Bamako, Mali
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Samba O. Sow
eCentre pour le Développement des Vaccins, Bamako, Mali
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Inacio Mandomando
fCentro de Investigação em Saúde da Manhiça, Maputo, Mozambique
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Pedro L. Alonso
fCentro de Investigação em Saúde da Manhiça, Maputo, Mozambique
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Thandavarayan Ramamurthy
gNational Institute of Cholera and Enteric Diseases, Kolkata, India
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Dipika Sur
gNational Institute of Cholera and Enteric Diseases, Kolkata, India
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Karen Kotloff
dSchool of Medicine, University of Maryland, Baltimore, Maryland, USA
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James Nataro
hDepartment of Pediatrics, University of Virginia, Charlottesville, Virginia, USA
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Myron M. Levine
dSchool of Medicine, University of Maryland, Baltimore, Maryland, USA
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O. Colin Stine
dSchool of Medicine, University of Maryland, Baltimore, Maryland, USA
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Eric Houpt
aDivision of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, USA
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Andrew B. Onderdonk
Brigham and Women's Hospital
Roles: Editor
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DOI: 10.1128/JCM.01374-17
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Article Information

DOI 
https://doi.org/10.1128/JCM.01374-17
PubMed 
29118177

Published By 
American Society for Microbiology Journals
History 
  • Received August 28, 2017
  • Returned for modification September 18, 2017
  • Accepted November 2, 2017
  • Published online January 24, 2018.

Copyright & Usage 
Copyright © 2018 Liu et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Editors and / or Reviewers 
  • Andrew B. Onderdonk, Editor, Brigham and Women's Hospital

Article Versions

  • Accepted Manuscript version (November 08, 2017).
  • You are viewing the most recent version of this article.

Author Information

  1. Jie Liua,
  2. Mathieu Almeidab,d,
  3. Furqan Kabirc,
  4. Sadia Shakoorc,
  5. Shahida Qureshic,
  6. Anita Zaidic,
  7. Shan Lid,
  8. Boubou Tambourae,
  9. Samba O. Sowe,
  10. Inacio Mandomandof,
  11. Pedro L. Alonsof,
  12. Thandavarayan Ramamurthyg,
  13. Dipika Surg,
  14. Karen Kotloffd,
  15. James Nataroh,
  16. Myron M. Levined,
  17. O. Colin Stined and
  18. Eric Houpta
  1. aDivision of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, USA
  2. bCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA
  3. cAga Khan University, Karachi, Pakistan
  4. dSchool of Medicine, University of Maryland, Baltimore, Maryland, USA
  5. eCentre pour le Développement des Vaccins, Bamako, Mali
  6. fCentro de Investigação em Saúde da Manhiça, Maputo, Mozambique
  7. gNational Institute of Cholera and Enteric Diseases, Kolkata, India
  8. hDepartment of Pediatrics, University of Virginia, Charlottesville, Virginia, USA
  • Address correspondence to O. Colin Stine, cstine{at}som.umaryland.edu, or Eric Houpt, erh6k{at}virginia.edu.
  • J.L., M.A., and F.K. contributed equally to this article.

  • Citation Liu J, Almeida M, Kabir F, Shakoor S, Qureshi S, Zaidi A, Li S, Tamboura B, Sow SO, Mandomando I, Alonso PL, Ramamurthy T, Sur D, Kotloff K, Nataro J, Levine MM, Stine OC, Houpt E. 2018. Direct detection of Shigella in stool specimens by use of a metagenomic approach. J Clin Microbiol 56:e01374-17. https://doi.org/10.1128/JCM.01374-17.

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Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach
Jie Liu, Mathieu Almeida, Furqan Kabir, Sadia Shakoor, Shahida Qureshi, Anita Zaidi, Shan Li, Boubou Tamboura, Samba O. Sow, Inacio Mandomando, Pedro L. Alonso, Thandavarayan Ramamurthy, Dipika Sur, Karen Kotloff, James Nataro, Myron M. Levine, O. Colin Stine, Eric Houpt
Journal of Clinical Microbiology Jan 2018, 56 (2) e01374-17; DOI: 10.1128/JCM.01374-17

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Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach
Jie Liu, Mathieu Almeida, Furqan Kabir, Sadia Shakoor, Shahida Qureshi, Anita Zaidi, Shan Li, Boubou Tamboura, Samba O. Sow, Inacio Mandomando, Pedro L. Alonso, Thandavarayan Ramamurthy, Dipika Sur, Karen Kotloff, James Nataro, Myron M. Levine, O. Colin Stine, Eric Houpt
Journal of Clinical Microbiology Jan 2018, 56 (2) e01374-17; DOI: 10.1128/JCM.01374-17
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KEYWORDS

PCR
Shigella
diarrhea
metagenomics

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