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Virology

HIV-2 Drug Resistance Genotyping from Dried Blood Spots

Dana N. Raugi, Robert S. Nixon, Sally Leong, Khadim Faye, Jean Phillipe Diatta, Fatima Sall, Robert A. Smith, ElHadji Ibrahima Sall, Jean Jacques Malomar, Moussa Seydi, Geoffrey S. Gottlieb
Michael J. Loeffelholz, Editor
Dana N. Raugi
aCenter for Emerging and Re-Emerging Infectious Diseases, Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, Washington, USA
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  • ORCID record for Dana N. Raugi
Robert S. Nixon
aCenter for Emerging and Re-Emerging Infectious Diseases, Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, Washington, USA
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Sally Leong
aCenter for Emerging and Re-Emerging Infectious Diseases, Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, Washington, USA
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Khadim Faye
bService des Maladies Infectieuses et Tropicales, Ibrahima Diop Mar, Centre Hospitalier National Universitaire de Fann, Universite Cheikh Anta Diop de Dakar, Dakar, Senegal
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Jean Phillipe Diatta
cCentre de Sante de Ziguinchor, Ziguinchor, Senegal
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Fatima Sall
bService des Maladies Infectieuses et Tropicales, Ibrahima Diop Mar, Centre Hospitalier National Universitaire de Fann, Universite Cheikh Anta Diop de Dakar, Dakar, Senegal
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Robert A. Smith
aCenter for Emerging and Re-Emerging Infectious Diseases, Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, Washington, USA
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ElHadji Ibrahima Sall
cCentre de Sante de Ziguinchor, Ziguinchor, Senegal
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Jean Jacques Malomar
cCentre de Sante de Ziguinchor, Ziguinchor, Senegal
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Moussa Seydi
bService des Maladies Infectieuses et Tropicales, Ibrahima Diop Mar, Centre Hospitalier National Universitaire de Fann, Universite Cheikh Anta Diop de Dakar, Dakar, Senegal
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Geoffrey S. Gottlieb
aCenter for Emerging and Re-Emerging Infectious Diseases, Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, Washington, USA
dDepartment of Global Health, University of Washington, Seattle, Washington, USA
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Michael J. Loeffelholz
Cepheid
Roles: Editor
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DOI: 10.1128/JCM.02303-20
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ABSTRACT

The treatment of HIV-2 in resource-limited settings (RLS) is complicated by the limited availability of HIV-2-active antiretroviral drugs and inadequate access to HIV-2 viral load and drug resistance testing. Dried blood spots (DBS)-based drug resistance testing, widely studied for HIV-1, has not been reported for HIV-2 and could present an opportunity to improve care for HIV-2-infected individuals. We selected 150 DBS specimens from ongoing studies of antiretroviral therapy (ART) for HIV-2 infection in Senegal and subjected them to genotypic drug resistance testing. Total nucleic acid was extracted from DBS, reverse transcribed, PCR amplified, and analyzed by population-based Sanger sequencing, and major drug resistance-associated mutations (RAM) were identified. Parallel samples from plasma and peripheral blood mononuclear cells (PBMC) were also genotyped. We obtained 58 protease/reverse transcriptase genotypes. Plasma viral load was significantly correlated with genotyping success (P < 0.001); DBS samples with corresponding plasma viral load >250 copies/ml had a success rate of 86.8%. In paired DBS-plasma genotypes, 83.8% of RAM found in plasma were also found in DBS, and replicate DBS genotyping revealed that a single test detected 86.7% of known RAM. These findings demonstrate that DBS-based genotypic drug resistance testing for HIV-2 is feasible and can be deployed in RLS with limited infrastructure.

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HIV-2 Drug Resistance Genotyping from Dried Blood Spots
Dana N. Raugi, Robert S. Nixon, Sally Leong, Khadim Faye, Jean Phillipe Diatta, Fatima Sall, Robert A. Smith, ElHadji Ibrahima Sall, Jean Jacques Malomar, Moussa Seydi, Geoffrey S. Gottlieb for the University of Washington-Senegal HIV-2 Research Group
Journal of Clinical Microbiology Dec 2020, 59 (1) e02303-20; DOI: 10.1128/JCM.02303-20

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HIV-2 Drug Resistance Genotyping from Dried Blood Spots
Dana N. Raugi, Robert S. Nixon, Sally Leong, Khadim Faye, Jean Phillipe Diatta, Fatima Sall, Robert A. Smith, ElHadji Ibrahima Sall, Jean Jacques Malomar, Moussa Seydi, Geoffrey S. Gottlieb for the University of Washington-Senegal HIV-2 Research Group
Journal of Clinical Microbiology Dec 2020, 59 (1) e02303-20; DOI: 10.1128/JCM.02303-20
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  • Top
  • Article
    • ABSTRACT
    • INTRODUCTION
    • MATERIALS AND METHODS
    • RESULTS
    • DISCUSSION
    • APPENDIX A: PRIMERS FOR HIV-2 DBS-BASED GENOTYPIC TESTING
    • ACKNOWLEDGMENTS
    • FOOTNOTES
    • REFERENCES
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KEYWORDS

DBS
HIV-2
antiretroviral therapy
drug resistance
drug resistance testing
human immunodeficiency virus

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