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Virology

A Fast and Accessible Method for the Isolation of RNA, DNA, and Protein to Facilitate the Detection of SARS-CoV-2

Jose Carlos Ponce-Rojas, Michael S. Costello, Duncan A. Proctor, Kenneth S. Kosik, Maxwell Z. Wilson, Carolina Arias, Diego Acosta-Alvear
Jose Carlos Ponce-Rojas
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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Michael S. Costello
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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Duncan A. Proctor
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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Kenneth S. Kosik
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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Maxwell Z. Wilson
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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Carolina Arias
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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  • For correspondence: carolinaarias@ucsb.edu daa@lifesci.ucsb.edu
Diego Acosta-Alvear
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
1Department of Molecular, Cellular, and Developmental Biology, 2Neuroscience Research Institute, and 3Center for BioEngineering, University of California Santa Barbara, Santa Barbara, CA
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  • For correspondence: carolinaarias@ucsb.edu daa@lifesci.ucsb.edu
DOI: 10.1128/JCM.02403-20
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ABSTRACT

Management of the COVID-19 pandemic requires widespread SARS-CoV-2 testing. A main limitation for widespread SARS-CoV-2 testing is the global shortage of essential supplies, among these, RNA extraction kits. The need for commercial RNA extraction kits places a bottleneck on tests that detect SARS-CoV-2 genetic material, including PCR-based reference tests. Here we propose an alternative method we call PEARL (Precipitation Enhanced Analyte RetrievaL) that addresses this limitation. PEARL uses a lysis solution that disrupts cell membranes and viral envelopes while simultaneously providing conditions suitable for alcohol-based precipitation of RNA, DNA, and proteins. PEARL is a fast, low-cost, and simple method that uses common laboratory reagents and offers comparable performance to commercial RNA extraction kits. PEARL offers an alternative method to isolate host and pathogen nucleic acids and proteins to streamline the detection of DNA and RNA viruses, including SARS-CoV-2.

  • Copyright © 2020 Ponce-Rojas et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

This article is made available via the PMC Open Access Subset for unrestricted noncommercial re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

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A Fast and Accessible Method for the Isolation of RNA, DNA, and Protein to Facilitate the Detection of SARS-CoV-2
Jose Carlos Ponce-Rojas, Michael S. Costello, Duncan A. Proctor, Kenneth S. Kosik, Maxwell Z. Wilson, Carolina Arias, Diego Acosta-Alvear
Journal of Clinical Microbiology Dec 2020, JCM.02403-20; DOI: 10.1128/JCM.02403-20

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A Fast and Accessible Method for the Isolation of RNA, DNA, and Protein to Facilitate the Detection of SARS-CoV-2
Jose Carlos Ponce-Rojas, Michael S. Costello, Duncan A. Proctor, Kenneth S. Kosik, Maxwell Z. Wilson, Carolina Arias, Diego Acosta-Alvear
Journal of Clinical Microbiology Dec 2020, JCM.02403-20; DOI: 10.1128/JCM.02403-20
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