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Journal of Clinical Microbiology
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Accepted Manuscripts

February 10, 2021

  • Open Access
    Epidemiology
    Antibody responses to two recombinant treponemal antigens (rp17 and TmpA) before and after azithromycin treatment for yaws in Ghana and Papua New Guinea.
    Nishanth Parameswaran, Oriol Mitjà, Christian Bottomley, Cynthia Kwakye, Wendy Houinei, Allan Pillay, Damien Danavall, Kai-Hua Chi, Ronald C Ballard, Anthony W Solomon, Cheng Y Chen, Sibauk V. Bieb, Yaw Adu-Sarkodie, David CW Mabey, Kingsley Asiedu, Michael Marks, Diana Martin
  • Minireview
    Clinical Implications of Multiplex Pathogen Panels for the Diagnosis of Acute Viral Gastroenteritis
    Eli Wilber, Julia M Baker, Paulina Rebolledo
  • Bacteriology
    Evaluation of the Accelerate PhenoTM system for rapid identification and antimicrobial susceptibility testing of positive blood culture bottles inoculated with primary sterile specimens from patients with suspected severe infections
    V Chapot, L Effenberg, J Dohmen-Ruetten, J Buer, J Kehrmann
  • Minireview
    Molecular Amplification Assays Accuracy for Diagnosis of Staphylococcal Pneumonia: a Systematic Review and Meta-analysis
    Ke Chen, Sarfraz Ahmed, Changfeng Sun, Yun-Jian Sheng, Gang Wu, Cun-Liang Deng, Suvash Chandra Ojha
  • Free
    Commentary
    On the consequences of poorly defined breakpoints for rifampin susceptibility testing of Mycobacterium tuberculosis complex
    Claudio U. Köser, Sophia B. Georghiou, Thomas Schön, Max Salfinger
  • Virology
    Deciphering an Adenovirus F41 outbreak in hematopoietic stem cell transplant paediatric recipients by whole genome sequencing
    Caroline Lefeuvre, Maud Salmona, Linda Feghoul, Noémie Ranger, Séverine Mercier-Delarue, Laure Nizery, Aurélia Alimi, Jean-Hugues Dalle, Jérôme LeGoff

February 09, 2021

  • Open Access
    Epidemiology
    Evaluating Specimen Quality and Results from a Community-Wide, Home-Based Respiratory Surveillance Study
    Ashley E. Kim, Elisabeth Brandstetter, Naomi Wilcox, Jessica Heimonen, Chelsey Graham, Peter D. Han, Lea M. Starita, Denise J. McCulloch, Amanda M. Casto, Deborah A. Nickerson, Margaret M. Van de Loo, Jennifer Mooney, Misja Ilcisin, Kairsten A. Fay, Jover Lee, Thomas R. Sibley, Victoria Lyon, Rachel E. Geyer, Matthew Thompson, Barry R. Lutz, Mark J. Rieder, Trevor Bedford, Michael Boeckh, Janet A. Englund, Helen Y. Chu
    and on behalf of the Seattle Flu Study Investigators

February 03, 2021

  • Bacteriology
    Clinical Evaluation of a Real-Time PCR Assay for Simultaneous Detection of Helicobacter pylori and Genotypic Markers of Clarithromycin Resistance Directly from Stool
    Rebecca Marrero Rolon, Scott A Cunningham, Jayawant N Mandrekar, Erin T Polo, Robin Patel
  • Open Access
    Mycobacteriology and Aerobic Actinomycetes
    Mycobactericidal effect of different regimens measured by molecular bacterial load assay among people treated for multidrug-resistant tuberculosis in Tanzania
    Peter M. Mbelele, Emmanuel A. Mpolya, Elingarami Sauli, Bariki Mtafya, Nyanda E. Ntinginya, Kennedy K. Addo, Katharina Kreppel, Sayoki Mfinanga, Patrick P.J. Phillips, Stephen H. Gillespie, Scott K. Heysell, Wilber Sabiiti, Stellah G. Mpagama
  • Point-Counterpoint
    Point-Counterpoint: Should Clinical Microbiology Laboratories Report Vancomycin Minimum Inhibitory Concentrations?
    Sara L. Revolinski, Christopher D. Doern
  • Minireview
    Applications of machine learning to the problem of antimicrobial resistance: An emerging model for translational research
    Melis N. Anahtar, Jason H. Yang, Sanjat Kanjilal
  • Bacteriology
    A Test For The Rapid Detection of the Cefazolin Inoculum Effect in Methicillin-Susceptible Staphylococcus aureus
    Sandra Rincon, Lina P. Carvajal, Sara I. Gomez-Villegas, Aura M. Echeverri, Rafael Rios, An Dinh, Claudia Pedroza, Karen M. Ordoñez, Esteban Nannini, Zhizeng Sun, Vance G. Fowler, Barbara E. Murray, William R. Miller, Timothy Palzkill, Lorena Diaz, Cesar A. Arias, Jinnethe Reyes
  • Mycology
    The performance of two novel chromogenic media for the identification of multi-drug resistant Candida auris compared with other commercially available formulations
    Auke W. de Jong, Chendo Dieleman, Mauricio Carbia, Ratna Mohd Tap, Ferry Hagen

January 29, 2021

  • Free
    Virology
    Self-collected Saline Gargle Samples as an Alternative to Healthcare Worker Collected Nasopharyngeal Swabs for COVID-19 Diagnosis in Outpatients
    David M. Goldfarb, Peter Tilley, Ghada N. Al-Rawahi, Jocelyn A. Srigley, Geoffrey Ford, Heather Pedersen, Abhilasha Pabbi, Stephanie Hannam-Clark, Marthe Charles, Michelle Dittrick, Vijay J. Gadkar, Jeffrey M. Pernica, Linda M. N. Hoang

January 28, 2021

  • Free
    Virology
    Performance Characteristics of BinaxNOW COVID-19 Antigen Card for Screening Asymptomatic Individuals in a University Setting
    Nkemakonam C Okoye, Adam P Barker, Kenneth Curtis, Richard R Orlandi, Emily A Snavely, Cameron Wright, Kimberly E Hanson, Lauren N Pearson

January 27, 2021

  • Free
    Minireview
    Performance of Saliva, Oropharyngeal Swabs, and Nasal Swabs for SARS-CoV-2 Molecular Detection: A Systematic Review and Meta-analysis
    Rose A. Lee, Joshua C. Herigon, Andrea Benedetti, Nira R. Pollock, Claudia M. Denkinger
  • Immunoassays
    Novel genetic constructs for production of recombinant HTLV-1/2 antigens and evaluation of their reactivity to plasma samples from HTLV1-infected patients
    Ueriton Dias de Oliveira, Fred Luciano Neves Santos, Bernardo Galvão-Castro, Marco Aurelio Krieger, Nilson Ivo Tonin Zanchin
  • Commentary
    Recognition of Diagnostic Gaps for Laboratory Diagnosis of Fungal Diseases: Expert Opinion from the Fungal Diagnostics Laboratories Consortium (FDLC)
    Sean X. Zhang, N. Esther Babady, Kimberly E. Hanson, Amanda T. Harrington, Paige M.K. Larkin, Sixto M. Leal, Paul M. Luethy, Isabella W. Martin, Preeti Pancholi, Gary W. Procop, Stefan Riedel, Seyedmojtaba Seyedmousavi, Kaede V. Sullivan, Thomas J. Walsh, Shawn R. Lockhart
    and on behalf of the Fungal Diagnostics Laboratories Consortium (FDLC)

January 26, 2021

  • Free
    Virology
    Pooling of Nasopharyngeal (NP) Swab Samples to Overcome Global Shortage of rRT-PCR COVID-19 Test Kits
    Sunil More, Sai Narayanan, Girish Patil, Parna Ghosh, Samuel Pushparaj, Emily Cooper, Jerry Ritchey, Vinay K. Cheruvu, Anil Kaul, Akhilesh Ramachandran
  • Free
    Editorial
    Is the patient infected with SARS-CoV-2?
    Jeffrey D Klausner, Noah Kojima, Susan M. Butler-Wu

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DISCLAIMER: These manuscripts are provided "as is" without warranty of any kind, either expressly for a particular purpose, or non-infringement. Changes will be made to these manuscripts before publication. Review and/or use or reliance on these materials is at the discretion and risk of the reader/user. In no event shall American Society for Microbiology be liable for damages of any kind arising from these materials; references to, products or publications do not imply endorsement of those products or publications .

Accepted Manuscripts are PDF versions of manuscripts that have been peer reviewed and accepted but not yet copyedited. The manuscripts are published online as soon as possible after acceptance, on a weekly basis, before the copyedited, typeset articles are published. They are posted "as is" (i.e., as submitted by the authors at the modification stage) and do not reflect ASM editorial changes. No corrections/changes to the PDF manuscripts are accepted. Accordingly, there likely will be differences between the accepted manuscripts and the final, typeset articles. The manuscripts remain listed on the Accepted Manuscripts page until the final, typeset articles are posted. Supplemental material intended, and accepted, for publication is not posted until publication of the final, typeset articles.

Journal of Clinical Microbiology: 59 (3)

Current Issue

volume 59, issue 3
  • Table of Contents (PDF)
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  • Laboratory Diagnosis of COVID-19: Current Issues and Challenges
  • When To Retest: an Examination of Repeat COVID-19 PCR Patterns in an Ambulatory Population
  • Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
  • Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho
More...

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