TABLE 3.

Comparison of Affymetrix, adjusted present calls, and PCR detection for sequenced and clinical isolates

StrainsrtAcnaagr type
RawAdjustedPCRRawAdjustedPCRRawAdjustedPCR
CDC 1+++111
CDC 2+++111
CDC 3+++111
CDC 4+++111
CDC 5+++111
CDC 6+++111
CDC 7++++++333
CDC 8++++++333
CDC 9++++++333
CDC 10++++++333
CDC 11++++++333
CDC 12++++++333
CDC 13++++++333
CDC 14++++++333
CDC 15++++++111
CDC 16+++222
CDC 17+++222
CDC 18++++++3 or 433
CDC 19+++1 or 411
CDC 20++++222
CDC 21+++111
COL (lab 1)++++111
COL (lab 2)++++111
COL (lab 3)++++/−111
MRSA252++++++333
MSSA476++++++333
Mu50++++222
MW2++++++333
N315++++/−222
NCTC 8325+++1 or 411
  • a Genes were present (+) or absent (−) based on Affymetrix algorithms (raw), adjusted call determinations, and PCR detection. agr type determinations are also shown (1 to 4).