TABLE 2.

VP1 amino acid sequence comparison of various EV71 genotypes

Virus genotype and isolateAmino acid position
4141621223143585998143145164167179184240249262273
Genotype B1
    236-TW86aVDVTQNETSKSEDRVTSIIF
    237-TW86LDMTQNETSESEDRVTSIIF
    242-TW86LDMTQNETRESEDRVTSIIV
    244-TW86LDMNQNETSESEDRVTSIIF
Genotype B4
    N5101-TW98LDVTQNETSKTEERVTSVIF
    N1796-TW99bLDVTQNETSETEERVTSVIF
    N7008-TW99LNVTQNETSETQERVTSVIF
    S0318-TW01cLDVTQNETSETGERVTSVIF
Genotype B5
    N2838-TW03dLDVTQNETSQTEEKVTSVIF
    N1745-TW08eLDVTQNETSKTEDRVTSVIF
    M0448-TW08fLDVTQNETSETGDRVTSVIF
    N0692-TW08gLDVTQNETSETQDRVTSVIF
Genotype C2
    N4643-TW98hLDVTRDKASETEDRVSTIIF
    N5811-TW98iLDVTRDKASKTEDRVSTIIF
Genotype C4
    N3340-TW02jLDVTQNKASETEDRVSTVIF
    S0584-TW04kLDVTQNKASKTEDRVSTVIF
    N2413-TW04LDVTQNKASKTQDRVSTVIF
Genotype C5
    N1859-TW05LDVTQNKASETEDRFSTVVF
  • a The same sequence was also identified in 266-TW86.

  • b The same sequence was also identified in M0177-TW00, S0151-TW02, and S0296-TW00.

  • c The same sequence was also identified in S0004-TW03 and S0044-TW03.

  • d The same sequence was also identified in N2776-TW03.

  • e The same sequence was also identified in N0610-TW08 and N0623-TW08.

  • f The same sequence was also identified in M0084-TW08, M0380-TW08, and N1324-TW08.

  • g The same sequence was also identified in M0314-TW08 and N0561-TW08.

  • h The same sequence was also identified in N6500-TW98, N6356-TW98, H0139-TW98, TAINAN/6092/98, 2916-TAI-98, H0358-TW98, Tainan/5746/98, N5811-TW98, and H0001-TW98.

  • i The same sequence was also identified in H0001-TW98.

  • j The same sequence was also identified in N0775-TW07, N2873-TW05, N2121-TW04, and N1757-TW05.

  • k The same sequence was also identified in N2947-TW04.