TABLE 5

Total time of computational analysis, maximum computer/server specifications, and reference databases useda

ParticipantTime of analysis (h)DatabaseOperating systemCPUCPU MHzRAM (GB)
13NCBI ntUNIXVMVMVM
215.5NCBI ntUbuntu 16.04 LTS561,270378
360NCBI nt/nrCentOS 6242,40064
4216NCBI ntWindows XPIntel core i52,3008
526NCBI viral dbOS X2NANA
612NCBI nrUbuntu 14.04322,000503
76ViPR and NCBI ntBioLinux Ubuntu 14.0483.616
87NCBI ntCentOS 6.5642,300250
95NCBI nrUbuntu 12.04.5NA3,80050
1048NCBI ntCentOS 6.52 × AMD Opteron2,20032
1114NCBI nt/nrRHELVM, variableVM, variableVM, variable
1218NCBI viral dbLinux MintIntel Xenon X56506 × 2.67 Ghz25
1348NCBI ntUbuntu 14.04.4 LTS2 × AMD Opteron 617424 × 2.2 GHz128
  • a nr, nonredundant; nt, nucleotide; db, database; VM, virtual machine; NA, not available.