Table 1

Single nucleotide polymorphism profilesa

Sequence or clusterSNP profileSNP
1234567891011121314151617181920212223242526272829303132333435363738394041424344
ConsensusGATACCCGAGGCGCGGTCCCGAGCCTCGTCGAAGCTGGCGCACC
Clusters
    I14··C··T····A···AACT·············G··A·········
12··C··T···AA···AACT···········T·G··A·········
13··C··T····A···AACT·············G··A··A······
15··C··T····A···AACT·············G············
16··C··T····A···A·CT·············G··A·········
9··C·······A···A·C··············G············
33·CC·······A···A·C··········T···G············
5··C···A···A···A················G············
6··C···A·······A················G············
7··C···A·····················G··G············
8··C···A························G············
10··C····························G············
11··C·····························G······TTGTA
19··C·G··························G············
18··C·G··························G···CT·······
17··C·G··························G···C········
21·····················G···C··················
    II4·······T·············G···C··················
29·······T·············G···C·T················
32···G···TT············G···C····A·············
31·······TT···A········G···C······T···········
30·······TT···A········G···C····A·············
    III25··················T··G···C······T···········
3A············T····T··G···C·······C··········
1A··········A·T····T··G···C·······C··········
2A·················T··G···C·······C··········
27·············T····TTAG···C············T·····
26·············T····TTAG···C··················
28·············T····TTAG···C·T················
    IV22·····················GT··C··················
23·····················GT·TCT·················
20······················TTTCT·················
24·····················GTTTCT·················
  • a The SNP profiles were arranged according to the parsimony tree in Fig. 1. Dots indicate that the nucleotide is the same as that of the consensus sequence.