Table 3

Isolates with known STs

Sequencing platformSpeciesNo. of isolates with known STsaNo. of correctly identified STsb
Illumina
    Paired-end readsS. aureus66
K. pneumoniae44
    Single readsE. coli66
P. aeruginosa74
Roche 454E. coli22
P. aeruginosa22
Ion TorrentE. coli21
  • a Determined by traditional methods.

  • b Predicted by using WGS data.