TABLE 1

Details of cases and isolates

CaseIsolateDate of isolation (DD/MM/YYYY)SourceaCoverageb
11a16/07/2008SPT33.2
1b10/11/2008ISPT39.6
22a02/07/2010SPT55.6
2b03/04/2011SPT53.7
33a03/05/2013SPT36.3
3b10/05/2013SPT35.7
3c15/05/2013SPT39.3
3d17/05/2013SPT41.9
3e21/05/2013SPT167.8
44a29/07/2013SPT52.3
55a14/09/2013LN41.2
5b20/09/2013PUS47.9
5c08/07/2013LN55.7
66a01/01/2014SPT56.3
6b03/01/2014SPT51.6
6c06/01/2014SPT41.7
  • a SPT, sputum; ISPT, induced sputum; LN, lymph node.

  • b Fold sequence coverage of the H37Rv reference genome.