TABLE 2

Serotype determination from stool metagenomes of mice orally infected with Salmonella

Sampling time	Sample accession no.^a	No. of reads mapped to individual antigen alleles^c
Sampling time	Sample accession no.^a	wzx/wzy (O4)^b	fliC (i)	fljB (1,2)
Day −1	SRR916930	273	2	2
Day 3	SRR916932	521	10	11
Day 6	SRR916933	519	12	10
Day 14	SRR916931	1,572	21	21

↵a NCBI SRA accession number of the metagenome sequence.
↵b Predicted antigen type.
↵c The number of reads aligned to the best-mapped antigen allele after the first round of reads mapping.