TABLE 2

Serotype determination from stool metagenomes of mice orally infected with Salmonella

Sampling timeSample accession no.aNo. of reads mapped to individual antigen allelesc
wzx/wzy (O4)bfliC (i)fljB (1,2)
Day −1SRR91693027322
Day 3SRR9169325211011
Day 6SRR9169335191210
Day 14SRR9169311,5722121
  • a NCBI SRA accession number of the metagenome sequence.

  • b Predicted antigen type.

  • c The number of reads aligned to the best-mapped antigen allele after the first round of reads mapping.