TABLE 2

Evaluation of PhyResSE regarding lineage-defining mutations

No. of strainsGenotype determined:
ConventionallyaBy WGS
4BeijingBeijing
4CameroonCameroon
4EAIbEAI
1GhanaGhana
12HaarlemHaarlem
15LAMcLAM
3S typeS type
6West African 1West African 1
14West African 2West African 2
1NoneHaarlem
10NoneEuro-American superlineage
7Sierra Leone 1Euro-American superlineage
9Sierra Leone 2Euro-American superlineage
2X typeEuro-American superlineage
  • a By IS6110 fingerprinting, spoligotyping, and 24-locus MIRU-VNTR typing.

  • b EAI, East African Indian.

  • c LAM, Latin American Mediterranean.