TABLE 2

Carriage isolates

IsolateCapsular genogroup by WGSSequence typeaClonal complexb
PFE-C-0001NG-ctrAneg53ST53 complex
PFE-C-0002NG-ctrApos269ST269 complex
PFE-C-0003NG-ctrAneg53ST53 complex
PFE-C-0004NG-ctrAneg198ST198 complex
PFE-C-0005MnW184ST22 complex
PFE-C-0006NG-ctrAneg823ST198 complex
PFE-C-0007MnBNSTNST
PFE-C-0008MnW184ST22 complex
PFE-C-0009NG-ctrAneg53ST53 complex
PFE-C-0010NG-ctrAneg43ST41/44 complex/lineage 3
PFE-C-0011MnY23ST23 complex/cluster A3
PFE-C-0012NG-ctrAneg53ST53 complex
PFE-C-0013NG-ctrAneg53ST53 complex
PFE-C-0014NG-ctrAneg823ST198 complex
PFE-C-0015NG-ctrAneg43ST41/44 complex/lineage 3
PFE-C-0016MnBNSTNST
PFE-C-0017MnY23ST23 complex/cluster A3
PFE-C-0018MnBpartial269ST269 complex
PFE-C-0019MnY23ST23 complex/cluster A3
PFE-C-0020MnY23ST23 complex/cluster A3
PFE-C-0021NG-ctrAneg53ST53 complex
PFE-C-0022MnY23ST23 complex/cluster A3
PFE-C-0023NG-ctrAneg53ST53 complex
PFE-C-0024NG-ctrAneg823ST198 complex
PFE-C-0025MnBpartial6473ST41/44 complex/lineage 3
PFE-C-0026NG-ctrAneg1136ST1136 complex
PFE-C-0027MnC944ST41/44 complex/lineage 3
PFE-C-0028NG-ctrAneg43ST41/44 complex/lineage 3
PFE-C-0029NG-ctrAneg198ST198 complex
PFE-C-0030NG-ctrAneg53ST53 complex
PFE-C-0031NG-ctrAneg53ST53 complex
PFE-C-0032MnY23ST23 complex/cluster A3
PFE-C-0033MnY23ST23 complex/cluster A3
PFE-C-0034MnB6473ST41/44 complex/lineage 3
PFE-C-0035MnB43ST41/44 complex/lineage 3
PFE-C-0036MnC944ST41/44 complex/lineage 3
PFE-C-0037NG-ctrAneg1117ST1117 complex
PFE-C-0038NG-ctrAposNSTNST
PFE-C-0039MnY23ST23 complex/cluster A3
PFE-C-0040NG-ctrAneg823ST198 complex
PFE-C-0041MnY23ST23 complex/cluster A3
PFE-C-0042MnW184ST22 complex
PFE-C-0043MnB2726ST32 complex/ET-5 complex
PFE-C-0044MnB2726ST32 complex/ET-5 complex
PFE-C-0045NG-ctrApos23ST23 complex/cluster A3
PFE-C-0046NG-ctrAneg1136ST1136 complex
PFE-C-0047MnY23ST23 complex/cluster A3
PFE-C-0048MnB269ST269 complex
PFE-C-0049MnY23ST23 complex/cluster A3
PFE-C-0050NG-ctrAneg823ST198 complex
PFE-C-0051NG-ctrAneg1117ST1117 complex
PFE-C-0052MnB6473ST41/44 complex/lineage 3
PFE-C-0053NG-ctrAneg823ST198 complex
PFE-C-0054NG-ctrAneg198ST198 complex
PFE-C-0055NG-ctrAneg53ST53 complex
PFE-C-0056NG-ctrApos269ST269 complex
PFE-C-0057MnB2726ST32 complex/ET-5 complex
PFE-C-0058NG-ctrAneg53ST53 complex
PFE-C-0059NG-ctrAneg198ST198 complex
PFE-C-0060MnB2726ST32 complex/ET-5 complex
PFE-C-0061MnY23ST23 complex/cluster A3
PFE-C-0062NG-ctrAneg198ST198 complex
PFE-C-0063NG-ctrAneg1117ST1117 complex
PFE-C-0064MnW5389ST22 complex
PFE-C-0065MnW5389ST22 complex
PFE-C-0066MnB6473ST41/44 complex/lineage 3
PFE-C-0067MnY23ST23 complex/cluster A3
PFE-C-0068NG-ctrAneg53ST53 complex
PFE-C-0069MnY23ST23 complex/cluster A3
PFE-C-0070MnB43ST41/44 complex/lineage 3
PFE-C-0071MnW184ST22 complex
PFE-C-0072NG-ctrAneg823ST198 complex
PFE-C-0073MnW184ST22 complex
PFE-C-0074MnB2726ST32 complex/ET-5 complex
PFE-C-0075NG-ctrAneg53ST53 complex
PFE-C-0076NG-ctrAneg823ST198 complex
PFE-C-0077NG-ctrAneg823ST198 complex
PFE-C-0078MnBNSTNST
PFE-C-0079MnB6473ST41/44 complex/lineage 3
PFE-C-0080MnC944ST41/44 complex/lineage 3
PFE-C-0081MnW184ST22 complex
PFE-C-0082MnY23ST23 complex/cluster A3
PFE-C-0083MnB6473ST41/44 complex/lineage 3
PFE-C-0084NG-ctrAposNSTNST
PFE-C-0085MnYNSTNST
PFE-C-0086MnY23ST23 complex/cluster A3
PFE-C-0087MnW184ST22 complex
PFE-C-0088MnC278ST35 complex
PFE-C-0089MnY23ST23 complex/cluster A3
PFE-C-0090NG-ctrAneg1117ST1117 complex
PFE-C-0091NG-ctrAneg823ST198 complex
PFE-C-0092NG-ctrAneg823ST198 complex
PFE-C-0093NG-ctrAneg1136ST1136 complex
  • a NST, no sequence type, i.e., sequence type not assigned to gene alleles determined by multilocus sequence typing.

  • b ET, electrophoretic type.