TABLE 2.

Effect of missing data on reconstruction by structure-neighbor clustering and neighbor-joining phylogenetic analysis

Method and run no.Result for BLa of:
510
No missing dataAvg missing dataHigh missing dataNo missing dataAverage missing dataHigh missing data
EffbAcccEffAccEffAccEffAccEffAccEffAcc
Structure-neighbor clustering
    10.960.990.920.970.291.000.520.950.510.970.121.00
    20.880.960.881.000.471.000.850.820.660.850.640.85
    30.950.990.970.970.930.930.900.950.671.000.900.94
    40.801.000.840.950.800.970.621.000.830.990.500.97
    50.620.850.620.960.930.940.820.970.860.910.730.96
        Mean0.840.960.850.970.690.970.740.940.710.940.580.95
        SEMd0.060.030.060.010.130.010.070.030.060.030.130.03
Neighbor-joining phylogenetic reconstruction
    10.830.800.780.690.700.71
    20.750.730.730.740.700.70
    30.830.500.770.750.720.74
    40.760.780.750.800.780.79
    50.740.680.650.750.730.74
        Mean0.780.700.740.750.720.74
        SEM0.020.050.020.020.020.02
  • a BL, mean branch length.

  • b Eff, efficiency.

  • c Acc, accuracy.

  • d SEM, standard error of the mean.