Table 1.

Reference organisms, sources, and results of whole-cell hybridizations

Organism and strainaSerotype(s)/biotypebHybridization with probe
Accession no.Y.16S-69Y.ent.16S-184Y.p.16S-997Y.pseu.23S-1526E.car.16S-636
Yersinia enterocolitica
 IP 132c O1, O2, O3/3++
 IP 1154c O2, O3/3++
 Y 108-ce , n O3*/4 Z75316 ++
 MYOk O3/4+++
 NF-0e O5/1A++
 Y-5,27f O5, O27/2+++
 0310/90f O6, O30/1A++
 MY 79k O9/2++
 WA-314d O8/1B Z75318,o Z75324 p ++
 8081c O8/1B++
 1209-79d O13/1B++
 1223-75-1d O20/1B++
Yersinia pestis
 Kumag —/antiqua ++
 Yokohamag —/antiqua ++
 EV 76g , n —/orientalis Z75317 ++
 A1122g —/orientalis ++
 6/69h —/orientalis ++
 MP6g —/orientalis ++
 M23g —/orientalis ++
 G32g —/orientalis ++
 KIMg —/mediaevalis ++
Yersinia pseudotuberculosis
 H346.36/88f O1+++
 2020j O1+++
 444aj O1+++
 2019j O1+++
 H 191/91k O1A+++
 H 47/91k O1A+++
 PB1g O1A+++
 123i O1A+++
 1468i O1A+++
 4587i O1A+++
 H 268/91k O1B+++
 H 260/91k O1B+++
 O16i O1B+++
 O6i O1B+++
 541i O1B+++
 487i O1B+++
 Y-p-Tl O3+++
 YPIIIg , n O3 Z21939 +++
 H 267/91k O3+++
Yersinia frederikseniic O3 Z75319,o Z75325 p + NDm
Yersinia mollaretiic O3 Z75322,o Z75328 p +ND
Yersinia intermediac O3 Z75320,o Z75326 p +ND
Yersinia kristenseniic O3 Z75321,o Z75327 p ND
Y. ruckerik Z75323,o Z75329 p ND
Hafnia alvei DSM 30163+ND
Serratia marcescens ATCC 9141+ND
Serratia fonticola DSM 4576+ND
Rahnella aquatilis DSM 4594ND
Erwinia carotovora ATCC 43762++
Erwinia rhapontici LMG 2462+
Proteus mirabilisf ND
Escherichia coliXL-1-BlueND
Klebsiella oxytocaf ND
Citrobacter freundiif ND
Salmonella enteritidisf ND
Vibrio parahaemolyticus DSM 10027ND
Aeromonas hydrophila DSM 6173ND
Pasteurella multocida ATCC 12945ND
  • a DSM, Deutsche Stammsammlung von Mikroorganismen und Zellkulturen, Brunswick, Germany; ATCC, American Type Culture Collection, Rockville, Md.; LMG, Laboratorium voor Microbiologie, Universiteit Gent, Ghent, Belgium.

  • b —, no serotype detected.

  • c Strain as described in reference11.

  • d Strain as described in reference22.

  • e Strain as described in reference13.

  • f Strain obtained from Institut für Hygiene und Mikrobiologie, Würzburg, Germany.

  • g Strain as described in reference31.

  • h Strain as described in reference29.

  • i Strain obtained from I. Semenova, St. Petersburg, Russia.

  • j Strain obtained from J. Lomov, Rostov, Russia.

  • k Strain obtained from Hygiene Institut, Hamburg, Germany.

  • l Strain as described in reference32.

  • m ND, not determined.

  • n Complete 16S rRNA sequence was determined.

  • o V1 and V2 regions (positions 56 to 197) were sequenced.

  • p V3 region (positions 420 to 650) was sequenced.