TABLE 5

List of the 26 discrepancies between DNA identification and MSI result

DiscrepancyStrain originSequencing identificationIHEM/MRS-MSINCBI sequence comparison (% similitude)a
IdentificationNCBI reference accession no.IdentificationScoreNCBI reference accession no. used for comparison
1BrusselsAlternaria abundansFJ214898Chalastospora gossypii29JQ69363896 (574)*
2BrusselsArthrographis curvataNR_132010Arthrographis kalrae27NR_12610898 (581)*
3BordeauxAspergillus lentulusEF669825Aspergillus aureolus28EF66980894 (509)*
4BrusselsAspergillus pseudoglaucusEF651917Aspergillus rubrobrunneus28EF65192094 (403)*
5BordeauxAspergillus puulaauensisEF652266Aspergillus versicolor23JN85397996 (374)*
6BordeauxCeriporia lacerataKP677607Hexagonia hydnoides34AF16357696 (530)
7BordeauxCeriporia lacerataKP677607Hexagonia hydnoides23AF16357696 (530)
8BordeauxCeriporia lacerataKP677607Hexagonia hydnoides39AF16357696 (530)
9BrusselsFusarium incarnatum/equisetiKF255493Fusarium chlamydosporum21KR07177694 (527)
10MarseilleFusarium oxysporumKT794174Fusarium proliferatum32KT71621092 (649)
11MarseilleFusarium oxysporumKT794174Fusarium proliferatum27KT71621092 (649)
12MarseilleFusarium solaniKM231936Fusarium keratoplasticum37KT71621991 (641)*
13BrusselsMicrosporum incurvatumKC784357Microsporum gypseum31KC78435595 (666)*
14BordeauxPenicillium expansumAY674400Penicillium chrysogenum27AY49598194 (478)
15BordeauxPenicillium glabrumGU981619Eupenicillium pinetorum27JX27149391 (422)*
16BordeauxTalaromyces diversusKJ865723Talaromyces stollii28JX31563383 (429)*
17BrusselsTrichoderma longibrachiatumAY328039Trichoderma pseudokoningii46NR_12029698 (644)*
18NiceTrichophyton equinumKT310171Trichophyton tonsurans31KT310172100 (612)*
19BrusselsTrichophyton interdigitaleJX122216Trichophyton schoenleinii43DQ860752 to DQ86081798 (443)*
20BrusselsTrichophyton interdigitaleJX122216Trichophyton tonsurans44KT31017298 (612)*
21BrusselsTrichophyton interdigitaleJX122216Trichophyton tonsurans40KT31017298 (612)*
22MarseilleTrichophyton mentagrophytesJX122271Trichophyton tonsurans36KT31017297 (612)*
23MarseilleTrichophyton rubrumJX122363Trichophyton violaceum27KT31017399 (644)*
24BrusselsTrichophyton rubrumJX122363Trichophyton violaceum28KT31017399 (644)*
25BrusselsTrichophyton violaceumKT310173Trichophyton rubrum52JX12236399 (644)*
26MarseilleTrichophyton violaceumKT310173Trichophyton rubrum39JX12236399 (644)*
  • a *, Species belonging to the same species complex. The corresponding numbers of base pairs are indicated in parentheses.