TABLE 6.

Influenza virus strain and lineage identification using RPM v.1

Sample IDCollection dateRepresentative strain identification (GenBank accession no. of HA gene)aLineageb
1049930 Sept. 1999A/Charlottesville/10/99 (H3N2) (AF297094)A/Panama/2007/99
413945 Jan. 2000A/Sydney/5/97 (H3N2) (AF180584)A/Panama/2007/99
1055211 Jan. 2000A/France/2/00 (H3N2) (AY633997)A/Panama/2007/99
3049113 Jan. 2000A/New York/397/1999 (H3N2) (CY006163)A/Panama/2007/99
3900212 Jan. 2001A/Podgorica/4011/2001 (H1N1) (AJ457863)A/New Caledonia/20/99
702465 Feb. 2001A/Madrid/1082/2001 (H1N1) (AJ457886)*A/New Caledonia/20/99
5083324 Jan. 2002A/New York/110/2002 (H3N2) (CY000113)A/Panama/2007/99
615962 Feb. 2002A/Buenos Aires/722/01 (H3N2) (AF534056)A/Panama/2007/99
206947 Mar. 2002A/New York/101/2002 (H3N2) (CY001104)*A/Panama/2007/99
3184412 Nov. 2003A/New York/41/2003 (H3N2) (CY000153)*A/Fujian/411/2002
7079321 Nov. 2003A/New York/18/2003 (H3N2) (CY001061)*A/Fujian/411/2002
516721 Dec. 2003A/New York/28/2003 (H3N2) (CY000009)A/Fujian/411/2002
432691 Dec. 2003A/New York/28/2003 (H3N2) (CY000009)*A/Fujian/411/2002
516731 Dec. 2003A/New York/43/2003 (H3N2) (CY000169)*A/Fujian/411/2002
6241616 Dec. 2003A/New York/51/2003 (H3N2) (CY001064)*A/Fujian/411/2002
9078117 Dec. 2003A/New York/41/2003 (H3N2) (CY000153)*A/Fujian/411/2002
4893012 Jan. 2004A/Finland/305/2003 (H3N2) (DQ167271)A/Fujian/411/2002
4893413 Jan. 2004A/New York/34/2003 (H3N2) (CY0000431)A/Fujian/411/2002
3232318 Jan. 2005A/Cheju/311/2002 (H3N2) (AY589649)A/Fujian/411/2002
3232720 Jan. 2005A/New York/464/2005 (H3N2) (CY003648)A/California/7/2004
4937024 Jan. 2005A/New York/378/2005 (H3N2) (CY002016)A/California/7/2004
520675 Jan. 2005A/New York/244/2005 (H3N2) (CY002080)*A/California/7/2004
3232921 Jan. 2005A/New York/386/2004 (H3N2) (CY002040)A/California/7/2004
4936922 Jan. 2005A/New York/387/2004 (H3N2) (CY002048)A/California/7/2004
493761 Feb. 2005A/New York/461/2005 (H3N2) (CY006076)A/California/7/2004
493772 Feb. 2005A/New York/372/2004 (H3N2) (CY002224)*A/California/7/2004
493782 Feb. 2005A/New York/359/2005 (H3N2) (CY002000)A/California/7/2004
628183 Feb. 2005A/New York/359/2005 (H3N2) (CY002000)A/California/7/2004
520825 Feb. 2005A (H3N2)ND
3234914 Feb. 2005A/New York/379/2004 (H3N2) (CY002026)*A/California/7/2004
5208715 Feb. 2005A/Aichi/143/2005 (H3N2) (AB243872)A/California/7/2004
5208916 Feb. 2005A/New York/396/2005 (H3N2) (CY002072)A/California/7/2004
4941724 Feb. 2005A/New York/373/2005 (H3N2) (CY002456)*A/California/7/2004
5209525 Feb. 2005A/Finland/170/03 (H3N2) (AY661032)A/Fujian/411/2002
5209626 Feb. 2005A/Finland/170/03 (H3N2) (AY661032)A/Fujian/411/2002
5209928 Feb. 2005A/Canterbury/67/2005 (H3N2) (CY008059)A/California/7/2004
4942828 Feb. 2005A/New York/382/2005 (H3N2) (CY002032)*A/California/7/2004
494321 Mar. 2005A/New York/373/2005 (H3N2) (CY002456)*A/California/7/2004
494497 Mar. 2005A (H3N2)ND
  • a *, only a single strain was identified.

  • b ND, not detected.