TABLE 2.

Oligonucleotide used in the study

ProbeSequence (5′-3′)OPD codeaReferenceTemp (°C)Bacterial group(s) targeted
EUB338GCTGCCTCCCGTAGGAGTS-D-Bact-0338-a-A-18346Total bacteria
EUB785CTACCAGGGTATCTAATCCS-D-Bact-0785-a-A-191946Total bacteria
EUB927ACCGCTTGTGCGGGCCCS-D-Bact-0927-a-A-171046Total bacteria
EUB1055CACGAGCTGACGACAGCCATS-D-Bact-1055-a-A-201946Total bacteria
EUB1088GCTCGTTGCGGGACTTAACCS-D-Bact-1088-a-A-201946Total bacteria
Erec482GCTTCTTAGTCARGTACCGS-*-Erec-0482-a-A-19950Eubacterium rectale cluster
Bac303CCAATGTGGGGGACCTTS-*-Bacto-0303-a-A-172246Bacteroides and Prevotella
Bif164CATCCGGCATTACCACCCS-G-Bif-0164-a-A-181746Bifidobacterium spp.
Lab158GGTATTAGCAYCTGTTTCCAS-G-Lab-0158-a-A-201246Lactobacillus and Enterococcus spp.
Veil223AGACGCAATCCCCTCCTTS-*-Veil-0223-a-A-181149Veillonellae
Str493GTTAGCCGTCCCTTTCTGGS-*-Strc-0493-a-A-19950Streptococcus and Lactococcus spp.
Ec1531CACCGTAGTGCCTCGTCATCAL-S-Eco-1531-a-A-212746Enterobacteriaceae
Sta697TCCTCCATATCTCTGCGCS-*-Sta-0697-a-A-183458Staphylococcus spp.
Chis150TTATGCGGTATTAATCTYCCTTTS-*-Chis-0150-a-A-23949Clostridium histolyticum group
Clit135GTTATCCGTGTGTACAGGGS-*-Clit-0135-a-A-19951Clostridium lituseburense group
  • a OPD code, Oligonucleotide Probe Database code (2).