TABLE 4.

Polymorphic nucleotides in gene fragments COX3, L1A1, SADH and SYA1 for C. parapsilosis group II strainsa

Strain no.Nucleotide(s) and genotype in:
COX3L1A1SADHSYA1
117360G206496G7279109127169250268295352406472G26485992158211215239287323GDSTb
J981224AA1TT1CTTTACCTGGG1YRYRYTYCYM11
90-125--1--1ACGAGTTCATA2TACAT-CCTA22
02-212CT2CC2-C---------3CGTATACTTA33
92-181C-3--1-C---------3----------14
02-201C-3C-3ACGAGTCTATA4TACATACTTA45
82-33/698CT2CC2-C---------3CGTATACTTA33
J941221K--1--1-C---------3----------16
ATCC 96139CA3--1-----------1----------17
ATCC 96141CA3C-3-C---------3C---------58
  • a Numbers in column subheadings indicate the positions of each polymorphic site in the DNA sequence. The first sequence shown (strain J981224) is the complete sequence for MLST diploid sequence type (DST) 1. For the remainder of the table, only sites that differ from those of DST 1 are shown; sites that share the same nucleotide as DST1 are indicated by dashes. IUPAC one-letter codes for single and paired nucleotides are used throughout. G, genotype.

  • b DST, diploid sequence type, i.e., The composite of four genotypes.