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Journal of Clinical Microbiology
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genome analysis

  • Whole-Genome Sequencing of <span class="named-content genus-species" id="named-content-1">Corynebacterium diphtheriae</span> Isolates Recovered from an Inner-City Population Demonstrates the Predominance of a Single Molecular Strain
    Epidemiology
    Whole-Genome Sequencing of Corynebacterium diphtheriae Isolates Recovered from an Inner-City Population Demonstrates the Predominance of a Single Molecular Strain

    In some parts of the world, Corynebacterium diphtheriae has reemerged as a pathogen, especially as a cause of infections among impoverished and marginalized populations. We performed whole-genome sequencing (WGS) on all cutaneous C. diphtheriae isolates (n = 56) from Vancouver’s inner-city...

    Samuel D. Chorlton, Gordon Ritchie, Tanya Lawson, Marc G. Romney, Christopher F. Lowe
  • Open Access
    A Complete Genome Screening Program of Clinical Methicillin-Resistant <span class="named-content genus-species" id="named-content-1">Staphylococcus aureus</span> Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak
    Epidemiology
    A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak

    Whole-genome sequencing (WGS) of Staphylococcus aureus is increasingly used as part of infection prevention practices. In this study, we established a long-read technology-based WGS screening program of all first-episode methicillin-resistant Staphylococcus aureus (MRSA) blood infections at a major...

    Mitchell J. Sullivan, Deena R. Altman, Kieran I. Chacko, Brianne Ciferri, Elizabeth Webster, Theodore R. Pak, Gintaras Deikus, Martha Lewis-Sandari, Zenab Khan, Colleen Beckford, Angela Rendo, Flora Samaroo, Robert Sebra, Ramona Karam-Howlin, Tanis Dingle, Camille Hamula, Ali Bashir, Eric Schadt, Gopi Patel, Frances Wallach, Andrew Kasarskis, Kathleen Gibbs, Harm van Bakel
  • Open Access
    Epidemiology
    Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
    Ryan R. Wick, Eva Heinz, Kathryn E. Holt, Kelly L. Wyres
  • Minireview
    Towards a Universal Molecular Microbiological Test
    Richard J. N. Allcock, Amy V. Jennison, David Warrilow
  • Minireview
    Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections
    Ann-Katrin Llarena, Eduardo Taboada, Mirko Rossi
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