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Journal of Clinical Microbiology
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genotype

  • Open Access
    Analytical and Clinical Sample Performance Characteristics of the Onclarity Assay for the Detection of Human Papillomavirus
    Virology
    Analytical and Clinical Sample Performance Characteristics of the Onclarity Assay for the Detection of Human Papillomavirus

    The objective of this study was to determine the result reproducibility and performance of the BD Onclarity human papillomavirus (HPV) assay (Onclarity) on the BD Viper LT platform using both contrived and clinical specimens. Reproducibility was assessed in BD SurePath liquid-based cytology (LBC) medium (SurePath) using contrived panels (HPV genotype 16 [HPV16] positive, HPV18 positive, or HPV45 positive) or clinical specimens (HPV16, -...

    Stephen Young, Laurence Vaughan, Karen Yanson, Karen Eckert, Aojun Li, James Harris, Aaron Ermel, James A. Williams, Mohammad Al-Ghoul, Catherine L. Cammarata, Stephanie N. Taylor, Ronald Luff, Charles K. Cooper, Barbara Van Der Pol
  • Open Access
    Molecular Characterization of <span class="named-content genus-species" id="named-content-1">Mycoplasma pneumoniae</span> Isolates in the United States from 2012 to 2018
    Epidemiology
    Molecular Characterization of Mycoplasma pneumoniae Isolates in the United States from 2012 to 2018

    Mycoplasma pneumoniae is a major cause of community-acquired pneumonia. There are limited data in the United States on the molecular epidemiological characteristics of M. pneumoniae. We collected 446 M. pneumoniae-positive...

    L. Xiao, A. E. Ratliff, D. M. Crabb, E. Mixon, X. Qin, R. Selvarangan, Y.-W. Tang, X. Zheng, J. Dien Bard, T. Hong, M. Prichard, E. Brooks, S. Dallas, L. B. Duffy, K. B. Fowler, T. P. Atkinson, K. B. Waites
  • Invasive Infections Due to <em>Trichosporon</em>: Species Distribution, Genotyping, and Antifungal Susceptibilities from a Multicenter Study in China
    Mycology
    Invasive Infections Due to Trichosporon: Species Distribution, Genotyping, and Antifungal Susceptibilities from a Multicenter Study in China

    A total of 133 clinical Trichosporon isolates were collected in the National China Hospital Invasive Fungal Surveillance Net (CHIF-NET) program in 2009 to 2016. Accurate identification was performed by sequencing of the intergenic spacer 1 (IGS1) region.

    Li-Na Guo, Shu-Ying Yu, Po-Ren Hsueh, Abdullah M. S. Al-Hatmi, Jacques F. Meis, Ferry Hagen, Meng Xiao, He Wang, Cinzia Barresi, Meng-Lan Zhou, G. Sybren de Hoog, Ying-Chun Xu
  • Circulation of Distinct <em>Treponema pallidum</em> Strains in Individuals with Heterosexual Orientation and Men Who Have Sex with Men
    Epidemiology
    Circulation of Distinct Treponema pallidum Strains in Individuals with Heterosexual Orientation and Men Who Have Sex with Men

    Human treponematosis is caused by various pathogenic Treponema pallidum subspecies, including T. pallidum subsp. pallidum, T. pallidum subsp.

    ...
    Yoko Kojima, Keiichi Furubayashi, Takuya Kawahata, Haruyo Mori, Jun Komano
  • Monitoring Viral Genetic Variation as a Tool To Improve Molecular Diagnostics for Mumps Virus
    Virology
    Monitoring Viral Genetic Variation as a Tool To Improve Molecular Diagnostics for Mumps Virus

    Here, we report how the analysis of viral genetic variation using next-generation sequencing (NGS) can be used as a tool to improve mumps virus diagnostics. Analysis of NGS data from recently circulating mumps virus isolates allowed optimization of the current mumps virus real-time reverse transcription-PCR (RT-PCR) by primer and probe modifications due to nucleotide variations.

    Meik Dilcher, Kevin Barratt, Jennifer Douglas, Andrew Strathdee, Trevor Anderson, Anja Werno
  • Virology
    Monitoring Shedding of Five Genotypes of RotaTeq Vaccine Viruses by Genotype-Specific Real-Time Reverse Transcription-PCR Assays
    Yuki Higashimoto, Masaru Ihira, Yu Miyazaki, Ayumi Kuboshiki, Sayaka Yoshinaga, Hiroyuki Hiramatsu, Ryota Suzuki, Masafumi Miyata, Hiroki Miura, Satoshi Komoto, Jun Yukitake, Koki Taniguchi, Yoshiki Kawamura, Tetsushi Yoshikawa
  • Virology
    Characterization of Antigenic Relatedness between GII.4 and GII.17 Noroviruses by Use of Serum Samples from Norovirus-Infected Patients
    Ying-Chun Dai, Ming Xia, Qiong Huang, Ming Tan, Lin Qin, Ya-Li Zhuang, Yan Long, Jian-Dong Li, Xi Jiang, Xu-Fu Zhang
  • Bacteriology
    Genomic Characterization of Urethritis-Associated Neisseria meningitidis Shows that a Wide Range of N. meningitidis Strains Can Cause Urethritis
    Kevin C. Ma, Magnus Unemo, Samo Jeverica, Robert D. Kirkcaldy, Hideyuki Takahashi, Makoto Ohnishi, Yonatan H. Grad
  • Clinical Veterinary Microbiology
    Comparative Phenotypic and Genotypic Analysis of Edwardsiella Isolates from Different Hosts and Geographic Origins, with Emphasis on Isolates Formerly Classified as E. tarda, and Evaluation of Diagnostic Methods
    Stephen R. Reichley, Cynthia Ware, James Steadman, Patricia S. Gaunt, Julio C. García, Benjamin R. LaFrentz, Anil Thachil, Geoffrey C. Waldbieser, Cynthia B. Stine, Noemí Buján, Cova R. Arias, Thomas Loch, Timothy J. Welch, Rocco C. Cipriano, Terrence E. Greenway, Lester H. Khoo, David J. Wise, Mark L. Lawrence, Matt J. Griffin
  • Epidemiology
    Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome
    Virginia Post, Llinos G. Harris, Mario Morgenstern, Leonardos Mageiros, Matthew D. Hitchings, Guillaume Méric, Ben Pascoe, Samuel K. Sheppard, R. Geoff Richards, T. Fintan Moriarty

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