phylogeny
MinireviewPhylogenomic Pipeline Validation for Foodborne Pathogen Disease SurveillanceFoodborne pathogen surveillance in the United States is transitioning from strain identification using restriction digest technology (pulsed-field gel electrophoresis [PFGE]) to shotgun sequencing of the entire genome (whole-genome sequencing [WGS]). WGS requires a new suite of analysis tools, some of which have long histories in academia but are new to the field of public health and regulatory decision making.
- Mycobacteriology and Aerobic ActinomycetesPhylogeny and Identification of Nocardia Species on the Basis of Multilocus Sequence Analysis