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Journal of Clinical Microbiology
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Sequence Analysis, DNA

  • Bacteriology
    Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates
    Jamie K. Lemon, Pavel P. Khil, Karen M. Frank, John P. Dekker
  • Letter to the Editor
    Evaluation of a New Commercial Microarray Platform for the Simultaneous Detection of β-Lactamase and mcr-1 and mcr-2 Genes in Enterobacteriaceae
    Odette J. Bernasconi, Luigi Principe, Regula Tinguely, Aneta Karczmarek, Vincent Perreten, Francesco Luzzaro, Andrea Endimiani
  • Open Access
    Mycobacteriology and Aerobic Actinomycetes
    Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
    Antonina A. Votintseva, Phelim Bradley, Louise Pankhurst, Carlos del Ojo Elias, Matthew Loose, Kayzad Nilgiriwala, Anirvan Chatterjee, E. Grace Smith, Nicolas Sanderson, Timothy M. Walker, Marcus R. Morgan, David H. Wyllie, A. Sarah Walker, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal
  • Open Access
    Mycobacteriology and Aerobic Actinomycetes
    Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus
    Kurt R. Wollenberg, Christopher A. Desjardins, Aksana Zalutskaya, Vervara Slodovnikova, Andrew J. Oler, Mariam Quiñones, Thomas Abeel, Sinead B. Chapman, Michael Tartakovsky, Andrei Gabrielian, Sven Hoffner, Aliaksandr Skrahin, Bruce W. Birren, Alexander Rosenthal, Alena Skrahina, Ashlee M. Earl
  • Open Access
    Virology
    Assessment of a Novel Automatic Real-Time PCR Assay on the Cobas 4800 Analyzer as a Screening Platform for Hepatitis C Virus Genotyping in Clinical Practice: Comparison with Massive Sequencing
    Leonardo Nieto-Aponte, Josep Quer, Alicia Ruiz-Ripa, David Tabernero, Carolina Gonzalez, Josep Gregori, Marta Vila, Miriam Asensio, Damir Garcia-Cehic, Gerardo Ruiz, Qian Chen, Laura Ordeig, Meritxell Llorens, Montserrat Saez, Juan I. Esteban, Rafael Esteban, Maria Buti, Tomas Pumarola, Francisco Rodriguez-Frias
  • Open Access
    Bacteriology
    Identification of Strain-Specific Sequences That Distinguish a Mycoplasma gallisepticum Vaccine Strain from Field Isolates
    Camir Ricketts, Larissa Pickler, John Maurer, Saravanaraj Ayyampalayam, Maricarmen García, Naola M. Ferguson-Noel
  • Mycology
    Rapid Molecular Identification of Pathogenic Yeasts by Pyrosequencing Analysis of 35 Nucleotides of Internal Transcribed Spacer 2
    Andrew M. Borman, Christopher J. Linton, Debra Oliver, Michael D. Palmer, Adrien Szekely, Elizabeth M. Johnson
  • Mycobacteriology and Aerobic Actinomycetes
    Simultaneous Sequence Analysis of the 16S rRNA and rpoB Genes by Use of RipSeq Software To Identify Mycobacterium Species
    Keith E. Simmon, Øyvind Kommedal, Øystein Saebo, Bjarte Karlsen, Cathy A. Petti
  • Bacteriology
    Evaluation of a Commercial Microarray System for Detection of SHV-, TEM-, CTX-M-, and KPC-Type β-Lactamase Genes in Gram-Negative Isolates
    Andrea Endimiani, Andrea M. Hujer, Kristine M. Hujer, Julian A. Gatta, Andrew C. Schriver, Michael R. Jacobs, Louis B. Rice, Robert A. Bonomo
  • Epidemiology
    Characterization of Epidemiologically Unrelated Acinetobacter baumannii Isolates from Four Continents by Use of Multilocus Sequence Typing, Pulsed-Field Gel Electrophoresis, and Sequence-Based Typing of blaOXA-51-like Genes
    Ahmed Hamouda, Benjamin A. Evans, Kevin J. Towner, Sebastian G. B. Amyes

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