Sequence Analysis, DNA

Bacteriology
Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates
Jamie K. Lemon, Pavel P. Khil, Karen M. Frank, John P. Dekker
Letter to the Editor
Evaluation of a New Commercial Microarray Platform for the Simultaneous Detection of β-Lactamase and mcr-1 and mcr-2 Genes in Enterobacteriaceae
Odette J. Bernasconi, Luigi Principe, Regula Tinguely, Aneta Karczmarek, Vincent Perreten, Francesco Luzzaro, Andrea Endimiani
Open Access

Mycobacteriology and Aerobic Actinomycetes
Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
Antonina A. Votintseva, Phelim Bradley, Louise Pankhurst, Carlos del Ojo Elias, Matthew Loose, Kayzad Nilgiriwala, Anirvan Chatterjee, E. Grace Smith, Nicolas Sanderson, Timothy M. Walker, Marcus R. Morgan, David H. Wyllie, A. Sarah Walker, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal
Open Access

Mycobacteriology and Aerobic Actinomycetes
Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus
Kurt R. Wollenberg, Christopher A. Desjardins, Aksana Zalutskaya, Vervara Slodovnikova, Andrew J. Oler, Mariam Quiñones, Thomas Abeel, Sinead B. Chapman, Michael Tartakovsky, Andrei Gabrielian, Sven Hoffner, Aliaksandr Skrahin, Bruce W. Birren, Alexander Rosenthal, Alena Skrahina, Ashlee M. Earl
Open Access

Virology
Assessment of a Novel Automatic Real-Time PCR Assay on the Cobas 4800 Analyzer as a Screening Platform for Hepatitis C Virus Genotyping in Clinical Practice: Comparison with Massive Sequencing
Leonardo Nieto-Aponte, Josep Quer, Alicia Ruiz-Ripa, David Tabernero, Carolina Gonzalez, Josep Gregori, Marta Vila, Miriam Asensio, Damir Garcia-Cehic, Gerardo Ruiz, Qian Chen, Laura Ordeig, Meritxell Llorens, Montserrat Saez, Juan I. Esteban, Rafael Esteban, Maria Buti, Tomas Pumarola, Francisco Rodriguez-Frias
Open Access

Bacteriology
Identification of Strain-Specific Sequences That Distinguish a Mycoplasma gallisepticum Vaccine Strain from Field Isolates
Camir Ricketts, Larissa Pickler, John Maurer, Saravanaraj Ayyampalayam, Maricarmen García, Naola M. Ferguson-Noel
Mycology
Rapid Molecular Identification of Pathogenic Yeasts by Pyrosequencing Analysis of 35 Nucleotides of Internal Transcribed Spacer 2
Andrew M. Borman, Christopher J. Linton, Debra Oliver, Michael D. Palmer, Adrien Szekely, Elizabeth M. Johnson
Mycobacteriology and Aerobic Actinomycetes
Simultaneous Sequence Analysis of the 16S rRNA and rpoB Genes by Use of RipSeq Software To Identify Mycobacterium Species
Keith E. Simmon, Øyvind Kommedal, Øystein Saebo, Bjarte Karlsen, Cathy A. Petti
Bacteriology
Evaluation of a Commercial Microarray System for Detection of SHV-, TEM-, CTX-M-, and KPC-Type β-Lactamase Genes in Gram-Negative Isolates
Andrea Endimiani, Andrea M. Hujer, Kristine M. Hujer, Julian A. Gatta, Andrew C. Schriver, Michael R. Jacobs, Louis B. Rice, Robert A. Bonomo
Epidemiology
Characterization of Epidemiologically Unrelated Acinetobacter baumannii Isolates from Four Continents by Use of Multilocus Sequence Typing, Pulsed-Field Gel Electrophoresis, and Sequence-Based Typing of bla_OXA-51-like Genes
Ahmed Hamouda, Benjamin A. Evans, Kevin J. Towner, Sebastian G. B. Amyes

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Sequence Analysis, DNA

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